GLYMA10G39080 (Glycine max)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03638 (TCR) IPR005172 GLYMA10G39080 T345405_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCX2
M07300_2.00 		Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW		 Dap-seq
OMalley et al.(2016)
TCX2_col_a 		0.672 0.921
TCX2
M07301_2.00 		Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA		 Dap-seq
OMalley et al.(2016)
TCX2_colamp_a 		0.672 0.921
PK22848.1
M02532_2.00 		Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9724 		0.672 0.908
TCX3
M01087_2.00 		Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN		 PBM
Sullivan et al.(2014)
pTH7218 		0.672 0.895
TCX3
M02522_2.00 		Arabidopsis thaliana
WTTYAAAH
DTTTRAAW		 PBM
Weirauch et al.(2014)
pTH7421 		0.672 0.895
TCX3
M07297_2.00 		Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH		 Dap-seq
OMalley et al.(2016)
SOL1_colamp_a 		0.672 0.895
TCX3
M07298_2.00 		Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW		 Dap-seq
OMalley et al.(2016)
SOL1_col 		0.672 0.895
TSO1
M07299_2.00 		Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW		 Dap-seq
OMalley et al.(2016)
TSO1_col_a 		0.672 0.882
BRADI1G55710
M02525_2.00 		Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN		 PBM
Weirauch et al.(2014)
pTH9241 		0.672 0.868
TCX4
M02521_2.00 		Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH		 PBM
Weirauch et al.(2014)
pTH7573 		0.672 0.737
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00 		Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN		 PBM
Weirauch et al.(2014)
pTH9457 		0.672 0.645
AT5G25790
M01319_2.00 		Arabidopsis thaliana
NHYRAAHN
NDTTYRDN		 PBM
Lambert et al.(2019)
pTH11533 		0.672 0.632
AT2G20110
M02520_2.00 		Arabidopsis thaliana
DTTTAAAH
DTTTAAAH		 PBM
Weirauch et al.(2014)
pTH7914 		0.672 0.605
TCX5
M02523_2.00 		Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN		 PBM
Weirauch et al.(2014)
pTH8164 		0.672 0.605
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00 		Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN		 PBM
Weirauch et al.(2014)
pTH9252 		0.672 0.605
AT2G20110
M07295_2.00 		Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_col_a 		0.672 0.605
AT2G20110
M07296_2.00 		Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a 		0.672 0.605
lin54
M02526_2.00 		Danio rerio
NHTYRAAH
DTTYRADN		 PBM
Weirauch et al.(2014)
pTH8399 		0.672 0.579
ENSTSYG00000005291
M02528_2.00 		Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN		 PBM
Weirauch et al.(2014)
pTH9366 		0.672 0.579
LIN54
M02527_2.00 		Gallus gallus
NRTTYAAAH
DTTTRAAYN		 PBM
Weirauch et al.(2014)
pTH8566 		0.672 0.566
GE12548
M02529_2.00 		Drosophila yakuba
DTTYAAAY
RTTTRAAH		 PBM
Weirauch et al.(2014)
pTH9262 		0.672 0.566
GSPATT00010696001
M02530_2.00 		Paramecium tetraurelia
NNBRAAHN
NDTTYVNN		 PBM
Weirauch et al.(2014)
pTH8720 		0.672 0.566
SPU_025306
M02531_2.00 		Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN		 PBM
Weirauch et al.(2014)
pTH9286 		0.672 0.566
XP_002124866.1
M01321_2.00 		Ciona intestinalis
NDTTYRAAN
NTTYRAAHN		 PBM
Lambert et al.(2019)
pTH9835 		0.672 0.566
gw1.20.00.89.1
M02535_2.00 		Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW		 PBM
Weirauch et al.(2014)
pTH9647 		0.672 0.566
PK27683.1
M01322_2.00 		Cannabis sativa
NDTTYAAAH
DTTTRAAHN		 PBM
Lambert et al.(2019)
pTH11347 		0.672 0.553
BGIBMGA008956
M02524_2.00 		Bombyx mori
AATTTAAAW
WTTTAAATT		 PBM
Weirauch et al.(2014)
pTH9238 		0.672 0.539
NEMVEDRAFT_v1g111410
M01320_2.00 		Nematostella vectensis
NNNNYRWRN
NYWYRNNNN		 PBM
Lambert et al.(2019)
pTH9771 		0.672 0.539
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA10G39080.2 TCR/CxC 474 511
GLYMA10G39080.2 TCR/CxC 560 597

Links

Other TCR/CxC family TFs
Other Glycine max TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF9 Arabidopsis thaliana AT5G44210 D
ERF4_TOBAC Nicotiana tabacum ERF4_TOBAC D
PK19363.1 Cannabis sativa PK19363.1 D
AMTR_s00026p00180130 Amborella trichopoda AMTR_s00026p00180130 I
AMTR_s00115p00032780 Amborella trichopoda AMTR_s00115p00032780 I
BGIOSGA004611 Oryza indica BGIOSGA004611 I
BGIOSGA017796 Oryza indica BGIOSGA017796 I
Bo1g108970 Brassica oleracea Bo1g108970 I
Bo2g122260 Brassica oleracea Bo2g122260 I
Bo3g066710 Brassica oleracea Bo3g066710 I
Bo3g074840 Brassica oleracea Bo3g074840 I
Bra001588 Brassica rapa Bra001588 I
Bra001784 Brassica rapa Bra001784 I
Bra006325 Brassica rapa Bra006325 I
Bra015266 Brassica rapa Bra015266 I
Bra036016 Brassica rapa Bra036016 I
Bra038261 Brassica rapa Bra038261 I
BRADI2G21060 Brachypodium distachyon BRADI2G21060 I
BRADI2G52370 Brachypodium distachyon BRADI2G52370 I
BRADI3G18070 Brachypodium distachyon BRADI3G18070 I
ERF9 Arabidopsis lyrata fgenesh2_kg.8__388__AT5G44210.1 I
GLYMA06G35710 Glycine max GLYMA06G35710 I
GLYMA07G03041 Glycine max GLYMA07G03041 I
GLYMA08G23074 Glycine max GLYMA08G23074 I
GLYMA08G43300 Glycine max GLYMA08G43300 I
GLYMA12G26836 Glycine max GLYMA12G26836 I
GLYMA12G35550 Glycine max GLYMA12G35550 I
GLYMA13G30990 Glycine max GLYMA13G30990 I
GLYMA13G34920 Glycine max GLYMA13G34920 I
GLYMA15G08370 Glycine max GLYMA15G08370 I
GLYMA18G10290 Glycine max GLYMA18G10290 I
GRMZM2G132185 Zea mays GRMZM2G132185 I
GRMZM2G310368 Zea mays GRMZM2G310368 I
GSMUA_Achr1G25890_001 Musa acuminata GSMUA_Achr1G25890_001 I
GSMUA_Achr4G23620_001 Musa acuminata GSMUA_Achr4G23620_001 I
GSMUA_Achr4G33270_001 Musa acuminata GSMUA_Achr4G33270_001 I
GSMUA_Achr6G00250_001 Musa acuminata GSMUA_Achr6G00250_001 I
GSMUA_Achr7G00350_001 Musa acuminata GSMUA_Achr7G00350_001 I
GSMUA_Achr7G03640_001 Musa acuminata GSMUA_Achr7G03640_001 I
GSMUA_Achr8G03550_001 Musa acuminata GSMUA_Achr8G03550_001 I
GSMUA_Achr8G33590_001 Musa acuminata GSMUA_Achr8G33590_001 I
GSMUA_Achr9G11480_001 Musa acuminata GSMUA_Achr9G11480_001 I
GSMUA_AchrUn_randomG16100_001 Musa acuminata GSMUA_AchrUn_randomG16100_001 I
LPERR01G29260 Leersia perrieri LPERR01G29260 I
LPERR03G32900 Leersia perrieri LPERR03G32900 I
LPERR05G17480 Leersia perrieri LPERR05G17480 I
MLOC_24530 Hordeum vulgare MLOC_24530 I
MLOC_73358 Hordeum vulgare MLOC_73358 I
MTR_2g014340 Medicago truncatula MTR_2g014340 I
MTR_2g078680 Medicago truncatula MTR_2g078680 I
MTR_4g009260 Medicago truncatula MTR_4g009260 I
MTR_4g078710 Medicago truncatula MTR_4g078710 I
OB01G42720 Oryza brachyantha OB01G42720 I
OBART01G33870 Oryza barthii OBART01G33870 I
OBART05G21580 Oryza barthii OBART05G21580 I
OGLUM01G38110 Oryza glumaepatula OGLUM01G38110 I
OGLUM05G22790 Oryza glumaepatula OGLUM05G22790 I
OLONG_021733 Oryza longistaminata OLONG_021733 I
OMERI01G30710 Oryza meridionalis OMERI01G30710 I
OMERI05G19490 Oryza meridionalis OMERI05G19490 I
ONIVA01G38670 Oryza nivara ONIVA01G38670 I
ONIVA05G22270 Oryza nivara ONIVA05G22270 I
OPUNC01G32930 Oryza punctata OPUNC01G32930 I
OPUNC05G19230 Oryza punctata OPUNC05G19230 I
ORGLA01G0278100 Oryza glaberrima ORGLA01G0278100 I
ORGLA05G0187600 Oryza glaberrima ORGLA05G0187600 I
ORUFI01G37120 Oryza rufipogon ORUFI01G37120 I
ORUFI05G22850 Oryza rufipogon ORUFI05G22850 I
OS01G0797600 Oryza sativa OS01G0797600 I
OS05G0497300 Oryza sativa OS05G0497300 I
PGSC0003DMG400000091 Solanum tuberosum PGSC0003DMG400000091 I
PGSC0003DMG400012828 Solanum tuberosum PGSC0003DMG400012828 I
PGSC0003DMG400013744 Solanum tuberosum PGSC0003DMG400013744 I
PGSC0003DMG400026821 Solanum tuberosum PGSC0003DMG400026821 I
PGSC0003DMG400028853 Solanum tuberosum PGSC0003DMG400028853 I
PGSC0003DMG401013892 Solanum tuberosum PGSC0003DMG401013892 I
PGSC0003DMG402013892 Solanum tuberosum PGSC0003DMG402013892 I
POPTR_0001s32050 Populus trichocarpa POPTR_0001s32050 I
POPTR_0001s40770 Populus trichocarpa POPTR_0001s40770 I
POPTR_0004s04720 Populus trichocarpa POPTR_0004s04720 I
POPTR_0011s05580 Populus trichocarpa POPTR_0011s05580 I
POPTR_0011s11620 Populus trichocarpa POPTR_0011s11620 I
POPTR_0013s15440 Populus trichocarpa POPTR_0013s15440 I
POPTR_0017s08090 Populus trichocarpa POPTR_0017s08090 I
PRUPE_ppa010090mg Prunus persica PRUPE_ppa010090mg I
PRUPE_ppa010982mg Prunus persica PRUPE_ppa010982mg I
PRUPE_ppa020928mg Prunus persica PRUPE_ppa020928mg I
Q84LQ6_SOLLC Solanum lycopersicum Q84LQ6_SOLLC I
Q84XB1_SOLLC Solanum lycopersicum Q84XB1_SOLLC I
Sb03g037080 Sorghum bicolor Sb03g037080 I
Sb09g024400 Sorghum bicolor Sb09g024400 I
Si002729m.g Setaria italica Si002729m.g I
Si023088m.g Setaria italica Si023088m.g I
Solyc01g095500.2 Solanum lycopersicum Solyc01g095500.2 I
Solyc07g053740.1 Solanum lycopersicum Solyc07g053740.1 I
Solyc10g009110.1 Solanum lycopersicum Solyc10g009110.1 I
Solyc12g005960.1 Solanum lycopersicum Solyc12g005960.1 I
Solyc12g049560.1 Solanum lycopersicum Solyc12g049560.1 I
TCM_008162 Theobroma cacao TCM_008162 I
TCM_027348 Theobroma cacao TCM_027348 I
TCM_029820 Theobroma cacao TCM_029820 I
TCM_031608 Theobroma cacao TCM_031608 I
TRAES3BF075600050CFD_g Triticum aestivum TRAES3BF075600050CFD_g I
VIT_09s0002g08830 Vitis vinifera VIT_09s0002g08830 I
VIT_10s0003g00140 Vitis vinifera VIT_10s0003g00140 I
VIT_12s0028g03270 Vitis vinifera VIT_12s0028g03270 I
VIT_19s0014g02240 Vitis vinifera VIT_19s0014g02240 I
Ca_00327 Cicer arietinum Ca_00327 I
Ca_11261 Cicer arietinum Ca_11261 I
Ca_20041 Cicer arietinum Ca_20041 I
Ca_20544 Cicer arietinum Ca_20544 I
Ca_22534 Cicer arietinum Ca_22534 I
Cla002268 Citrullus lanatus Cla002268 I
Cla015583 Citrullus lanatus Cla015583 I
Cla020000 Citrullus lanatus Cla020000 I
Pm011391 Prunus mume Pm011391 I
Pm013734 Prunus mume Pm013734 I
27446.m000475 Ricinus communis 27446.m000475 I
27904.m000217 Ricinus communis 27904.m000217 I
29983.m003147 Ricinus communis 29983.m003147 I
30190.m011321 Ricinus communis 30190.m011321 I
cassava1589.valid.m1 Manihot esculenta cassava1589.valid.m1 I
cassava20937.m1 Manihot esculenta cassava20937.m1 I
cassava37846.valid.m1 Manihot esculenta cassava37846.valid.m1 I
cassava38416.m1 Manihot esculenta cassava38416.m1 I
cassava46560.m1 Manihot esculenta cassava46560.m1 I
Cucsa.046390 Cucumis sativus Cucsa.046390 I
Cucsa.105790 Cucumis sativus Cucsa.105790 I
Cucsa.126880 Cucumis sativus Cucsa.126880 I
Cucsa.195660 Cucumis sativus Cucsa.195660 I
fgenesh1_pg.scaffold_23000002 Physcomitrella patens fgenesh1_pg.scaffold_23000002 I
mgf019214m Mimulus guttatus mgf019214m I
mgf023662m Mimulus guttatus mgf023662m I
Aquca_036_00070 Aquilegia coerulea Aquca_036_00070 I
Bostr.19424s0625 Boechera stricta Bostr.19424s0625 I
Bostr.28625s0184 Boechera stricta Bostr.28625s0184 I
Bostr.3148s0037 Boechera stricta Bostr.3148s0037 I
Cagra.0316s0033 Capsella grandiflora Cagra.0316s0033 I
Cagra.0381s0006 Capsella grandiflora Cagra.0381s0006 I
Carubv10014475m.g Capsella rubella Carubv10014475m.g I
Carubv10014552m.g Capsella rubella Carubv10014552m.g I
Carubv10027246m.g Capsella rubella Carubv10027246m.g I
Ciclev10009484m.g Citrus clementina Ciclev10009484m.g I
Ciclev10016276m.g Citrus clementina Ciclev10016276m.g I
Ciclev10016463m.g Citrus clementina Ciclev10016463m.g I
Eucgr.F01164 Eucalyptus grandis Eucgr.F01164 I
evm.TU.supercontig_10.125 Carica papaya evm.TU.supercontig_10.125 I
evm.TU.supercontig_131.83 Carica papaya evm.TU.supercontig_131.83 I
evm.TU.supercontig_27.16 Carica papaya evm.TU.supercontig_27.16 I
evm.TU.supercontig_83.80 Carica papaya evm.TU.supercontig_83.80 I
gene15953-v1.0-hybrid Fragaria vesca gene15953-v1.0-hybrid I
gene29738-v1.0-hybrid Fragaria vesca gene29738-v1.0-hybrid I
Gorai.002G067600 Gossypium raimondii Gorai.002G067600 I
Gorai.005G200200 Gossypium raimondii Gorai.005G200200 I
Gorai.006G088000 Gossypium raimondii Gorai.006G088000 I
Gorai.006G107500 Gossypium raimondii Gorai.006G107500 I
Gorai.009G375700 Gossypium raimondii Gorai.009G375700 I
Gorai.010G155900 Gossypium raimondii Gorai.010G155900 I
Gorai.010G256600 Gossypium raimondii Gorai.010G256600 I
Gorai.011G029800 Gossypium raimondii Gorai.011G029800 I
Lus10015415.g Linum usitatissimum Lus10015415.g I
Lus10039857.g Linum usitatissimum Lus10039857.g I
MDP0000264187 Malus domestica MDP0000264187 I
MDP0000324718 Malus domestica MDP0000324718 I
orange1.1g026240m.g Citrus sinensis orange1.1g026240m.g I
orange1.1g028454m.g Citrus sinensis orange1.1g028454m.g I
orange1.1g047950m.g Citrus sinensis orange1.1g047950m.g I
Pavir.Ca01358 Panicum virgatum Pavir.Ca01358 I
Pavir.Ea03147 Panicum virgatum Pavir.Ea03147 I
Pavir.Eb03458 Panicum virgatum Pavir.Eb03458 I
Pavir.Fa01728 Panicum virgatum Pavir.Fa01728 I
Pavir.Fa01730 Panicum virgatum Pavir.Fa01730 I
Pavir.Fb00951 Panicum virgatum Pavir.Fb00951 I
Pavir.Fb00952 Panicum virgatum Pavir.Fb00952 I
Pavir.Fb01486 Panicum virgatum Pavir.Fb01486 I
Pavir.J14354 Panicum virgatum Pavir.J14354 I
SapurV1A.0012s0580 Salix purpurea SapurV1A.0012s0580 I
SapurV1A.0032s0470 Salix purpurea SapurV1A.0032s0470 I
SapurV1A.0058s0710 Salix purpurea SapurV1A.0058s0710 I
SapurV1A.1000s0130 Salix purpurea SapurV1A.1000s0130 I
SapurV1A.1244s0010 Salix purpurea SapurV1A.1244s0010 I
SapurV1A.1325s0040 Salix purpurea SapurV1A.1325s0040 I
SapurV1A.2062s0030 Salix purpurea SapurV1A.2062s0030 I
SapurV1A.3143s0020 Salix purpurea SapurV1A.3143s0020 I
Thhalv10003431m.g Eutrema salsugineum Thhalv10003431m.g I
Thhalv10021456m.g Eutrema salsugineum Thhalv10021456m.g I
PK02602.1 Cannabis sativa PK02602.1 I
chr6.CM0114.120.nc Lotus japonicus chr6.CM0114.120.nc I
ERF084 Arabidopsis thaliana AT1G80580 N
BGIOSGA019608 Oryza indica BGIOSGA019608 N
Bo2g095830 Brassica oleracea Bo2g095830 N
Bra008460 Brassica rapa Bra008460 N
fgenesh1_pm.C_scaffold_2001935 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2001935 N
OMERI05G10040 Oryza meridionalis OMERI05G10040 N
ONIVA05G11840 Oryza nivara ONIVA05G11840 N
ORUFI05G12300 Oryza rufipogon ORUFI05G12300 N
OS05G0316800 Oryza sativa OS05G0316800 N
PGSC0003DMG400010135 Solanum tuberosum PGSC0003DMG400010135 N
SELMODRAFT_412693 Selaginella moellendorffii SELMODRAFT_412693 N
SELMODRAFT_417258 Selaginella moellendorffii SELMODRAFT_417258 N
SELMODRAFT_428344 Selaginella moellendorffii SELMODRAFT_428344 N
SELMODRAFT_428599 Selaginella moellendorffii SELMODRAFT_428599 N
Solyc03g117230.1 Solanum lycopersicum Solyc03g117230.1 N
cassava2923.m1 Manihot esculenta cassava2923.m1 N
e_gw1.14.213.1 Physcomitrella patens e_gw1.14.213.1 N
e_gw1.145.79.1 Physcomitrella patens e_gw1.145.79.1 N
e_gw1.15.234.1 Physcomitrella patens e_gw1.15.234.1 N
e_gw1.276.69.1 Physcomitrella patens e_gw1.276.69.1 N
gw1.204.54.1 Physcomitrella patens gw1.204.54.1 N
gw1.340.39.1 Physcomitrella patens gw1.340.39.1 N
Bostr.20129s0456 Boechera stricta Bostr.20129s0456 N
Cagra.1725s0082 Capsella grandiflora Cagra.1725s0082 N
Carubv10022119m.g Capsella rubella Carubv10022119m.g N
Eucgr.F03941 Eucalyptus grandis Eucgr.F03941 N
Gorai.009G125700 Gossypium raimondii Gorai.009G125700 N
Lus10014345.g Linum usitatissimum Lus10014345.g N
Lus10026053.g Linum usitatissimum Lus10026053.g N
Thhalv10000556m.g Eutrema salsugineum Thhalv10000556m.g N
Thhalv10019474m.g Eutrema salsugineum Thhalv10019474m.g N