fgenesh1_pg.scaffold_23000002 (Physcomitrella patens)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 fgenesh1_pg.scaffold_23000002 T007231_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF7
M01617_2.00 		Arabidopsis thaliana
NGCCGNMNNN
NNNKNCGGCN		 PBM
Weirauch et al.(2014)
pTH7606 		0.689 0.725
ERF7
M06620_2.00 		Arabidopsis thaliana
YHNHYNYYDYCDCCGCCGYCD
HGRCGGCGGHGRHRRNRDNDR		 Dap-seq
OMalley et al.(2016)
ERF7_col_a 		0.689 0.725
ERF7
M06621_2.00 		Arabidopsis thaliana
NNNHNNHNHHDSCGCCGCCRH
DYGGCGGCGSHDDNDNNDNNN		 Dap-seq
OMalley et al.(2016)
ERF7_colamp_a 		0.689 0.725
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_23000002 AP2 350 401

Links

Other AP2 family TFs
Other Physcomitrella patens TFs

91 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SELMODRAFT_417258 Selaginella moellendorffii SELMODRAFT_417258 N 0.855
SELMODRAFT_412693 Selaginella moellendorffii SELMODRAFT_412693 N 0.855
SELMODRAFT_428344 Selaginella moellendorffii SELMODRAFT_428344 N 0.842
SELMODRAFT_428599 Selaginella moellendorffii SELMODRAFT_428599 N 0.842
gw1.340.39.1 Physcomitrella patens gw1.340.39.1 N 0.833
gw1.204.54.1 Physcomitrella patens gw1.204.54.1 N 0.825
Ca_20041 Cicer arietinum Ca_20041 I 0.815
SapurV1A.1000s0130 Salix purpurea SapurV1A.1000s0130 I 0.812
GLYMA08G23074 Glycine max GLYMA08G23074 I 0.809
e_gw1.145.79.1 Physcomitrella patens e_gw1.145.79.1 N 0.808
VIT_09s0002g08830 Vitis vinifera VIT_09s0002g08830 I 0.806
mgf023662m Mimulus guttatus mgf023662m I 0.806
evm.TU.supercontig_10.125 Carica papaya evm.TU.supercontig_10.125 I 0.806
POPTR_0001s32050 Populus trichocarpa POPTR_0001s32050 I 0.805
Cucsa.105790 Cucumis sativus Cucsa.105790 I 0.805
27446.m000475 Ricinus communis 27446.m000475 I 0.805
Cla015583 Citrullus lanatus Cla015583 I 0.805
cassava38416.m1 Manihot esculenta cassava38416.m1 I 0.805
SapurV1A.0058s0710 Salix purpurea SapurV1A.0058s0710 I 0.805
GLYMA07G03041 Glycine max GLYMA07G03041 I 0.802
TCM_027348 Theobroma cacao TCM_027348 I 0.799
Pm013734 Prunus mume Pm013734 I 0.799
MDP0000264187 Malus domestica MDP0000264187 I 0.799
POPTR_0017s08090 Populus trichocarpa POPTR_0017s08090 I 0.799
Gorai.006G107500 Gossypium raimondii Gorai.006G107500 I 0.797
e_gw1.276.69.1 Physcomitrella patens e_gw1.276.69.1 N 0.797
MTR_4g009260 Medicago truncatula MTR_4g009260 I 0.796
AMTR_s00026p00180130 Amborella trichopoda AMTR_s00026p00180130 I 0.796
orange1.1g047950m.g Citrus sinensis orange1.1g047950m.g I 0.796
Ciclev10027171m.g Citrus clementina Ciclev10027171m.g I 0.796
e_gw1.15.234.1 Physcomitrella patens e_gw1.15.234.1 N 0.795
PRUPE_ppa020928mg Prunus persica PRUPE_ppa020928mg I 0.793
e_gw1.14.213.1 Physcomitrella patens e_gw1.14.213.1 N 0.792
gene15953-v1.0-hybrid Fragaria vesca gene15953-v1.0-hybrid I 0.791
Eucgr.F03941 Eucalyptus grandis Eucgr.F03941 N 0.788
Carubv10022119m.g Capsella rubella Carubv10022119m.g N 0.786
Solyc03g117230.1 Solanum lycopersicum Solyc03g117230.1 N 0.786
Gorai.009G125700 Gossypium raimondii Gorai.009G125700 N 0.786
fgenesh1_pm.C_scaffold_2001935 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2001935 N 0.786
ERF084 Arabidopsis thaliana AT1G80580 N 0.786
Cagra.1725s0082 Capsella grandiflora Cagra.1725s0082 N 0.786
Bostr.20129s0456 Boechera stricta Bostr.20129s0456 N 0.786
Thhalv10000556m.g Eutrema salsugineum Thhalv10000556m.g N 0.782
Thhalv10019474m.g Eutrema salsugineum Thhalv10019474m.g N 0.782
Bra008460 Brassica rapa Bra008460 N 0.775
PGSC0003DMG400010135 Solanum tuberosum PGSC0003DMG400010135 N 0.750
Lus10014345.g Linum usitatissimum Lus10014345.g N 0.739
Bo2g095830 Brassica oleracea Bo2g095830 N 0.734
Lus10026053.g Linum usitatissimum Lus10026053.g N 0.731
OGLUM02G06860 Oryza glumaepatula OGLUM02G06860 I 0.716
Solyc07g049490.1 Solanum lycopersicum Solyc07g049490.1 I 0.716
ORUFI02G06880 Oryza rufipogon ORUFI02G06880 I 0.716
ORGLA02G0063000 Oryza glaberrima ORGLA02G0063000 I 0.716
OMERI02G07840 Oryza meridionalis OMERI02G07840 I 0.716
Gorai.007G312200 Gossypium raimondii Gorai.007G312200 I 0.714
Sb04g006080 Sorghum bicolor Sb04g006080 I 0.713
Pavir.Ab00660 Panicum virgatum Pavir.Ab00660 I 0.713
GRMZM2G146028 Zea mays GRMZM2G146028 I 0.713
Pavir.Aa03102 Panicum virgatum Pavir.Aa03102 I 0.713
Thhalv10021393m.g Eutrema salsugineum Thhalv10021393m.g I 0.712
BRADI3G18070 Brachypodium distachyon BRADI3G18070 I 0.712
BRADI3G06562 Brachypodium distachyon BRADI3G06562 I 0.712
GRMZM2G020150 Zea mays GRMZM2G020150 I 0.712
LPERR02G05920 Leersia perrieri LPERR02G05920 I 0.711
PGSC0003DMG400000681 Solanum tuberosum PGSC0003DMG400000681 I 0.711
GRMZM2G174347 Zea mays GRMZM2G174347 I 0.711
GLYMA02G46340 Glycine max GLYMA02G46340 I 0.711
OPUNC02G05940 Oryza punctata OPUNC02G05940 I 0.711
GRMZM2G079653 Zea mays GRMZM2G079653 I 0.711
PGSC0003DMG401013892 Solanum tuberosum PGSC0003DMG401013892 I 0.710
Solyc12g005960.1 Solanum lycopersicum Solyc12g005960.1 I 0.710
PGSC0003DMG402013892 Solanum tuberosum PGSC0003DMG402013892 I 0.710
GLYMA06G44430 Glycine max GLYMA06G44430 I 0.710
GSMUA_Achr1G25890_001 Musa acuminata GSMUA_Achr1G25890_001 I 0.709
GLYMA14G02360 Glycine max GLYMA14G02360 I 0.707
Eucgr.K00734 Eucalyptus grandis Eucgr.K00734 I 0.705
Bostr.15697s0157 Boechera stricta Bostr.15697s0157 I 0.702
Bostr.26675s0388 Boechera stricta Bostr.26675s0388 I 0.702
GLYMA12G13315 Glycine max GLYMA12G13315 I 0.702
Bra018864 Brassica rapa Bra018864 I 0.699
SELMODRAFT_17648 Selaginella moellendorffii SELMODRAFT_17648 I 0.697
SELMODRAFT_129122 Selaginella moellendorffii SELMODRAFT_129122 I 0.697
Gorai.013G169500 Gossypium raimondii Gorai.013G169500 I 0.696
cassava34729.m1 Manihot esculenta cassava34729.m1 I 0.695
Solyc01g095500.2 Solanum lycopersicum Solyc01g095500.2 I 0.693
gene03450-v1.0-hybrid Fragaria vesca gene03450-v1.0-hybrid I 0.691
ERF7 Arabidopsis thaliana AT3G20310 D 0.689
PGSC0003DMG400000091 Solanum tuberosum PGSC0003DMG400000091 I 0.688
AMTR_s00040p00180260 Amborella trichopoda AMTR_s00040p00180260 I 0.681
GSMUA_AchrUn_randomG16100_001 Musa acuminata GSMUA_AchrUn_randomG16100_001 I 0.680
GSMUA_Achr3G13010_001 Musa acuminata GSMUA_Achr3G13010_001 I 0.678