Cagra.0380s0018 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.0380s0018 T007695_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF015
M06649_2.00 		Arabidopsis thaliana
YCACCGHCANHDNHNNNNNN
NNNNNNDNHDNTGDCGGTGR		 Dap-seq
OMalley et al.(2016)
At4g31060_col_a 		0.761 0.959
ERF015
M06650_2.00 		Arabidopsis thaliana
HDYCACCGACANHNN
NNDNTGTCGGTGRHD		 Dap-seq
OMalley et al.(2016)
At4g31060_colamp_a 		0.761 0.959
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0380s0018.1.p AP2 25 76

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29706.m001328 Ricinus communis 29706.m001328 I
29912.m005376 Ricinus communis 29912.m005376 I
AMTR_s00007p00193000 Amborella trichopoda AMTR_s00007p00193000 I
AT1G17520 Arabidopsis thaliana AT1G17520 I
AT1G72740 Arabidopsis thaliana AT1G72740 D
BGIOSGA004300 Oryza indica BGIOSGA004300 I
Bo3g184590 Brassica oleracea Bo3g184590 I
Bo5g023860 Brassica oleracea Bo5g023860 I
Bo5g077530 Brassica oleracea Bo5g077530 I
Bo6g018740 Brassica oleracea Bo6g018740 I
Bo6g116150 Brassica oleracea Bo6g116150 I
Bo8g067280 Brassica oleracea Bo8g067280 I
Bo8g104830 Brassica oleracea Bo8g104830 I
Bostr.26675s0174 Boechera stricta Bostr.26675s0174 I
Bostr.7128s0363 Boechera stricta Bostr.7128s0363 I
Bra016037 Brassica rapa Bra016037 I
Bra016598 Brassica rapa Bra016598 I
Bra018818 Brassica rapa Bra018818 I
Bra025967 Brassica rapa Bra025967 I
Bra030894 Brassica rapa Bra030894 I
Bra030992 Brassica rapa Bra030992 I
Bra039650 Brassica rapa Bra039650 I
BRADI2G42240 Brachypodium distachyon BRADI2G42240 I
BRADI2G47820 Brachypodium distachyon BRADI2G47820 I
Cagra.0824s0121 Capsella grandiflora Cagra.0824s0121 I
Cagra.1013s0027 Capsella grandiflora Cagra.1013s0027 I
Cagra.1262s0035 Capsella grandiflora Cagra.1262s0035 I
Cagra.2826s0004 Capsella grandiflora Cagra.2826s0004 I
Carubv10009763m.g Capsella rubella Carubv10009763m.g I
Carubv10009836m.g Capsella rubella Carubv10009836m.g I
Carubv10009890m.g Capsella rubella Carubv10009890m.g I
Carubv10020636m.g Capsella rubella Carubv10020636m.g I
cassava34930.m1 Manihot esculenta cassava34930.m1 I
cassava43824.valid.m1 Manihot esculenta cassava43824.valid.m1 I
Ca_02722 Cicer arietinum Ca_02722 I
Ca_10058 Cicer arietinum Ca_10058 I
chr2.LjT13P17.300.nd Lotus japonicus chr2.LjT13P17.300.nd I
chr3.LjT02L14.30.nd Lotus japonicus chr3.LjT02L14.30.nd I
Ciclev10009173m.g Citrus clementina Ciclev10009173m.g I
Ciclev10026245m.g Citrus clementina Ciclev10026245m.g I
Cla012798 Citrullus lanatus Cla012798 I
Cucsa.341020 Cucumis sativus Cucsa.341020 I
Eucgr.C00865 Eucalyptus grandis Eucgr.C00865 I
Eucgr.J02841 Eucalyptus grandis Eucgr.J02841 I
EuGene.0000030935 Micromonas pusilla EuGene.0000030935 I
EuGene.1300010252 Ostreococcus RCC809 EuGene.1300010252 I
evm.TU.supercontig_106.31 Carica papaya evm.TU.supercontig_106.31 I
evm.TU.supercontig_25.81 Carica papaya evm.TU.supercontig_25.81 I
fgenesh2_kg.2__1540__AT1G72740.1 Arabidopsis lyrata fgenesh2_kg.2__1540__AT1G72740.1 I
gene12682-v1.0-hybrid Fragaria vesca gene12682-v1.0-hybrid I
GLYMA07G00930 Glycine max GLYMA07G00930 I
GLYMA08G20270 Glycine max GLYMA08G20270 I
Gorai.009G143000 Gossypium raimondii Gorai.009G143000 I
GRMZM2G087817 Zea mays GRMZM2G087817 I
GRMZM2G136887 Zea mays GRMZM2G136887 I
GSMUA_Achr2G13040_001 Musa acuminata GSMUA_Achr2G13040_001 I
gw1.1.287.1 Physcomitrella patens gw1.1.287.1 I
gw1.176.27.1 Physcomitrella patens gw1.176.27.1 I
LjSGA_016825.2 Lotus japonicus LjSGA_016825.2 I
LjSGA_029815.1 Lotus japonicus LjSGA_029815.1 I
LPERR01G24270 Leersia perrieri LPERR01G24270 I
Lus10027621.g Linum usitatissimum Lus10027621.g I
Lus10030935.g Linum usitatissimum Lus10030935.g I
Lus10040111.g Linum usitatissimum Lus10040111.g I
MDP0000265359 Malus domestica MDP0000265359 I
mgf007122m Mimulus guttatus mgf007122m I
mgf009594m Mimulus guttatus mgf009594m I
MTR_2g099610 Medicago truncatula MTR_2g099610 I
MTR_8g018410 Medicago truncatula MTR_8g018410 I
OB01G37330 Oryza brachyantha OB01G37330 I
OBART01G28260 Oryza barthii OBART01G28260 I
OGLUM01G32190 Oryza glumaepatula OGLUM01G32190 I
OLONG_008666 Oryza longistaminata OLONG_008666 I
OMERI05G07460 Oryza meridionalis OMERI05G07460 I
ONIVA01G32190 Oryza nivara ONIVA01G32190 I
OPUNC01G28080 Oryza punctata OPUNC01G28080 I
orange1.1g023740m.g Citrus sinensis orange1.1g023740m.g I
orange1.1g024128m.g Citrus sinensis orange1.1g024128m.g I
ORGLA01G0233700 Oryza glaberrima ORGLA01G0233700 I
ORUFI01G31370 Oryza rufipogon ORUFI01G31370 I
OS01G0708000 Oryza sativa OS01G0708000 D
OSTLU_27049 Ostreococcus lucimarinus OSTLU_27049 I
Pavir.Ea02064 Panicum virgatum Pavir.Ea02064 I
Pavir.Ea02570 Panicum virgatum Pavir.Ea02570 I
Pavir.J27218 Panicum virgatum Pavir.J27218 I
PGSC0003DMG400023131 Solanum tuberosum PGSC0003DMG400023131 I
PGSC0003DMG401025742 Solanum tuberosum PGSC0003DMG401025742 I
PK00568.1 Cannabis sativa PK00568.1 I
Pm013309 Prunus mume Pm013309 I
Pm027209 Prunus mume Pm027209 I
POPTR_0006s14940 Populus trichocarpa POPTR_0006s14940 I
POPTR_0018s07040 Populus trichocarpa POPTR_0018s07040 I
PRUPE_ppa007796mg Prunus persica PRUPE_ppa007796mg I
PRUPE_ppa016498mg Prunus persica PRUPE_ppa016498mg I
SapurV1A.0087s0150 Salix purpurea SapurV1A.0087s0150 I
SapurV1A.0108s0150 Salix purpurea SapurV1A.0108s0150 I
Sb03g026470 Sorghum bicolor Sb03g026470 I
scaffold_101953.1 Arabidopsis lyrata scaffold_101953.1 I
SELMODRAFT_49296 Selaginella moellendorffii SELMODRAFT_49296 I
SELMODRAFT_49297 Selaginella moellendorffii SELMODRAFT_49297 I
Si002403m.g Setaria italica Si002403m.g I
Si002467m.g Setaria italica Si002467m.g I
Solyc07g040920.2 Solanum lycopersicum Solyc07g040920.2 I
Solyc11g044320.1 Solanum lycopersicum Solyc11g044320.1 I
TCM_029078 Theobroma cacao TCM_029078 I
TCM_042744 Theobroma cacao TCM_042744 I
Thhalv10008387m.g Eutrema salsugineum Thhalv10008387m.g I
Thhalv10011686m.g Eutrema salsugineum Thhalv10011686m.g I
Thhalv10018950m.g Eutrema salsugineum Thhalv10018950m.g I
TRAES3BF075800120CFD_g Triticum aestivum TRAES3BF075800120CFD_g I
TRAES3BF118300070CFD_g Triticum aestivum TRAES3BF118300070CFD_g I
Traes_3AL_12B53AB09 Triticum aestivum Traes_3AL_12B53AB09 I
Traes_3AL_CF481F6AC Triticum aestivum Traes_3AL_CF481F6AC I
TRB1 Arabidopsis thaliana AT1G49950 D
TRB1 Arabidopsis lyrata fgenesh2_kg.1__4077__AT1G49950.2 I
TRIUR3_08672 Triticum urartu TRIUR3_08672 I
VIT_11s0016g01890 Vitis vinifera VIT_11s0016g01890 I