Pavir.Ea03713 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ea03713 T009424_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-6
M00717_2.00 		Arabidopsis thaliana
NBGCYGNH
DNCRGCVN		 PBM
Chang et al.(2013)
pTH7225 		0.810 0.920
RAP2-6
M00841_2.00 		Arabidopsis thaliana
NGCCGHHNNN
NNNDDCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RAP2.6 		0.810 0.920
RAP2-6
M06579_2.00 		Arabidopsis thaliana
HHDYCKCCGCCGYMD
HKRCGGCGGMGRHDD		 Dap-seq
OMalley et al.(2016)
RAP26_col_a 		0.810 0.920
RAP2-6
M06580_2.00 		Arabidopsis thaliana
CGCCGY
RCGGCG		 Dap-seq
OMalley et al.(2016)
RAP26_colamp_a 		0.810 0.920
ERF115
M06657_2.00 		Arabidopsis thaliana
CCGCCGYMRYHDCCR
YGGHDRYKRCGGCGG		 Dap-seq
OMalley et al.(2016)
ERF115_col_a 		0.799 0.880
ERF115
M06658_2.00 		Arabidopsis thaliana
CKCCGCCGYMRYHDY
RHDRYKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ERF115_colamp_a 		0.799 0.880
ERF113
M01629_2.00 		Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN		 PBM
Weirauch et al.(2014)
pTH8097 		0.740 0.840
ABR1
M01051_2.00 		Arabidopsis thaliana
NYGSCGSCVNN
NNBGSCGSCRN		 PBM
Sullivan et al.(2014)
pTH7383 		0.714 0.840
ABR1
M06684_2.00 		Arabidopsis thaliana
CKCCGCCGYMDHHNYHNHH
DDNDRNDDHKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ABR1_col_a 		0.714 0.840
ABR1
M06685_2.00 		Arabidopsis thaliana
HNNHDSCGCCGCMAWHNNNNN
NNNNNDWTKGCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
ABR1_colamp_a 		0.714 0.840
AT2G33710
M01613_2.00 		Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN		 PBM
Weirauch et al.(2014)
pTH7543 		0.712 0.820
AT2G33710
M06606_2.00 		Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH		 Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a 		0.712 0.820
AT2G33710
M06607_2.00 		Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN		 Dap-seq
OMalley et al.(2016)
At2g33710_col 		0.712 0.820
LOC_Os08g36920
M01634_2.00 		Oryza sativa
NNNGSCGHNN
NNDCGSCNNN		 PBM
Weirauch et al.(2014)
pTH8596 		0.711 0.760
A4F248_TOBAC
M09725_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF1_01 		0.709 0.820
A4F249_TOBAC
M09726_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF2_01 		0.704 0.800
ERF5
M00721_2.00 		Arabidopsis thaliana
NNNGSMRNMN
NKNYKSCNNN		 PBM
Chang et al.(2013)
pTH7197 		0.679 0.780
ERF5
M06674_2.00 		Arabidopsis thaliana
YCDYCKCCGCCGYCD
HGRCGGCGGMGRHGR		 Dap-seq
OMalley et al.(2016)
ERF5_col_a 		0.679 0.780
ERF5
M06675_2.00 		Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN
NNNHDNHDRYGGCGGCGVHDN		 Dap-seq
OMalley et al.(2016)
ERF5_colamp_a 		0.679 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ea03713.1.p AP2 133 184
Pavir.Ea03713.2.p AP2 133 184

Links

Other AP2 family TFs
Other Panicum virgatum TFs

556 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30068.m002544 Ricinus communis 30068.m002544 I
AMTR_s00024p00224180 Amborella trichopoda AMTR_s00024p00224180 I
AMTR_s00024p00224470 Amborella trichopoda AMTR_s00024p00224470 I
AMTR_s00024p00224850 Amborella trichopoda AMTR_s00024p00224850 I
Aquca_002_00170 Aquilegia coerulea Aquca_002_00170 I
Aquca_025_00333 Aquilegia coerulea Aquca_025_00333 I
Aquca_076_00099 Aquilegia coerulea Aquca_076_00099 I
Bo2g012170 Brassica oleracea Bo2g012170 I
Bo7g090950 Brassica oleracea Bo7g090950 I
Bo9g165670 Brassica oleracea Bo9g165670 I
Bostr.0556s0467 Boechera stricta Bostr.0556s0467 I
Bostr.1460s0063 Boechera stricta Bostr.1460s0063 I
Bostr.2902s0211 Boechera stricta Bostr.2902s0211 I
Bra008740 Brassica rapa Bra008740 I
Bra023486 Brassica rapa Bra023486 I
Bra025311 Brassica rapa Bra025311 I
Bra025589 Brassica rapa Bra025589 I
Bra039065 Brassica rapa Bra039065 I
Cagra.3160s0003 Capsella grandiflora Cagra.3160s0003 I
Cagra.3166s0078 Capsella grandiflora Cagra.3166s0078 I
Cagra.4961s0006 Capsella grandiflora Cagra.4961s0006 I
Carubv10001990m.g Capsella rubella Carubv10001990m.g I
Carubv10005698m.g Capsella rubella Carubv10005698m.g I
Carubv10018791m.g Capsella rubella Carubv10018791m.g I
cassava2597.m1 Manihot esculenta cassava2597.m1 I
cassava26193.m1 Manihot esculenta cassava26193.m1 I
cassava27350.m1 Manihot esculenta cassava27350.m1 I
cassava32672.m1 Manihot esculenta cassava32672.m1 I
cassava34176.m1 Manihot esculenta cassava34176.m1 I
Ciclev10017556m.g Citrus clementina Ciclev10017556m.g I
Ciclev10021571m.g Citrus clementina Ciclev10021571m.g I
Ciclev10032713m.g Citrus clementina Ciclev10032713m.g I
Cla011528 Citrullus lanatus Cla011528 I
Cucsa.304110 Cucumis sativus Cucsa.304110 I
Eucgr.B00373 Eucalyptus grandis Eucgr.B00373 I
Eucgr.C01374 Eucalyptus grandis Eucgr.C01374 I
Eucgr.D02390 Eucalyptus grandis Eucgr.D02390 I
Eucgr.E01031 Eucalyptus grandis Eucgr.E01031 I
Eucgr.I01791 Eucalyptus grandis Eucgr.I01791 I
Eucgr.J02212 Eucalyptus grandis Eucgr.J02212 I
evm.TU.supercontig_124.57 Carica papaya evm.TU.supercontig_124.57 I
evm.TU.supercontig_96.57 Carica papaya evm.TU.supercontig_96.57 I
gene18691-v1.0-hybrid Fragaria vesca gene18691-v1.0-hybrid I
gene31098-v1.0-hybrid Fragaria vesca gene31098-v1.0-hybrid I
GL1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5000559 I
GL1 Arabidopsis thaliana AT3G27920 I
Gorai.004G150800 Gossypium raimondii Gorai.004G150800 I
Gorai.004G151000 Gossypium raimondii Gorai.004G151000 I
Gorai.007G001800 Gossypium raimondii Gorai.007G001800 I
Gorai.008G126700 Gossypium raimondii Gorai.008G126700 I
Gorai.012G061800 Gossypium raimondii Gorai.012G061800 I
GSMUA_Achr10G17610_001 Musa acuminata GSMUA_Achr10G17610_001 I
GSMUA_Achr3G07950_001 Musa acuminata GSMUA_Achr3G07950_001 I
GSMUA_Achr6G04400_001 Musa acuminata GSMUA_Achr6G04400_001 I
LjT02E24.110.nc Lotus japonicus LjT02E24.110.nc I
LjT02E24.130.nc Lotus japonicus LjT02E24.130.nc I
LjT02E24.60.nc Lotus japonicus LjT02E24.60.nc I
LjT16O05.150.nd Lotus japonicus LjT16O05.150.nd I
MDP0000164048 Malus domestica MDP0000164048 I
MDP0000199965 Malus domestica MDP0000199965 I
MDP0000264051 Malus domestica MDP0000264051 I
MDP0000537324 Malus domestica MDP0000537324 I
MDP0000578193 Malus domestica MDP0000578193 I
MDP0000650225 Malus domestica MDP0000650225 I
MDP0000915330 Malus domestica MDP0000915330 I
mgf023205m Mimulus guttatus mgf023205m I
MYB23 Arabidopsis thaliana AT5G40330 D
orange1.1g040841m.g Citrus sinensis orange1.1g040841m.g I
orange1.1g047269m.g Citrus sinensis orange1.1g047269m.g I
PDK_20s1554342g001 Phoenix dactylifera PDK_20s1554342g001 I
PK01088.1 Cannabis sativa PK01088.1 I
PK14784.1 Cannabis sativa PK14784.1 I
Pm006678 Prunus mume Pm006678 I
Pm018338 Prunus mume Pm018338 I
Pm024725 Prunus mume Pm024725 I
POPTR_0012s08190 Populus trichocarpa POPTR_0012s08190 I
POPTR_0015s08680 Populus trichocarpa POPTR_0015s08680 I
PRUPE_ppa009439mg Prunus persica PRUPE_ppa009439mg I
PRUPE_ppa010908mg Prunus persica PRUPE_ppa010908mg I
PRUPE_ppa014884mg Prunus persica PRUPE_ppa014884mg I
SapurV1A.1178s0050 Salix purpurea SapurV1A.1178s0050 I
SapurV1A.1404s0020 Salix purpurea SapurV1A.1404s0020 I
TCM_005112 Theobroma cacao TCM_005112 I
TCM_010360 Theobroma cacao TCM_010360 I
TCM_012057 Theobroma cacao TCM_012057 I
TCM_016886 Theobroma cacao TCM_016886 I
Thhalv10005428m.g Eutrema salsugineum Thhalv10005428m.g I
Thhalv10014715m.g Eutrema salsugineum Thhalv10014715m.g I
Thhalv10028340m.g Eutrema salsugineum Thhalv10028340m.g I
VIT_01s0127g00730 Vitis vinifera VIT_01s0127g00730 I
VIT_13s0084g00530 Vitis vinifera VIT_13s0084g00530 I
VIT_14s0066g01220 Vitis vinifera VIT_14s0066g01220 I
VIT_15s0046g00170 Vitis vinifera VIT_15s0046g00170 I
VIT_17s0000g08480 Vitis vinifera VIT_17s0000g08480 I
WER Arabidopsis lyrata fgenesh2_kg.6__1454__AT5G14750.1 I
WER Arabidopsis thaliana AT5G14750 D