CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra025589
(
Brassica rapa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bra025589
T267990_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB23
M07133_2.00
Arabidopsis thaliana
HCAACWAHHHH
DDDDTWGTTGD
Dap-seq
OMalley et al.(2016)
MYB23_col_a
0.909
1.000
WER
M11047_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WEREWOLF_Q2_01
0.817
0.957
WER
M11048_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WEREWOLF_Q2
0.817
0.957
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra025589.1-P
Myb
39
86
KGLWTVEEDKILMDYVRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNYL
Bra025589.1-P
Myb
92
137
RGNFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHL
Links
Other
Myb/SANT
family TFs
Other
Brassica rapa
TFs
96 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.3160s0003
Capsella grandiflora
Cagra.3160s0003
I
0.909
Carubv10005698m.g
Capsella rubella
Carubv10005698m.g
I
0.909
MYB23
Arabidopsis thaliana
AT5G40330
D
0.909
Bostr.7200s0005
Boechera stricta
Bostr.7200s0005
I
0.909
Thhalv10028340m.g
Eutrema salsugineum
Thhalv10028340m.g
I
0.893
Bo9g165670
Brassica oleracea
Bo9g165670
I
0.834
Bra008740
Brassica rapa
Bra008740
I
0.834
Cagra.3166s0078
Capsella grandiflora
Cagra.3166s0078
I
0.817
WER
Arabidopsis lyrata
fgenesh2_kg.6__1454__AT5G14750.1
I
0.817
Carubv10001990m.g
Capsella rubella
Carubv10001990m.g
I
0.817
Bostr.2902s0211
Boechera stricta
Bostr.2902s0211
I
0.817
Thhalv10014715m.g
Eutrema salsugineum
Thhalv10014715m.g
I
0.817
Bo2g012170
Brassica oleracea
Bo2g012170
I
0.817
WER
Arabidopsis thaliana
AT5G14750
D
0.817
Bostr.1460s0063
Boechera stricta
Bostr.1460s0063
I
0.813
Cagra.4961s0006
Capsella grandiflora
Cagra.4961s0006
I
0.755
Carubv10018791m.g
Capsella rubella
Carubv10018791m.g
I
0.755
Bra025311
Brassica rapa
Bra025311
I
0.754
Bo7g090950
Brassica oleracea
Bo7g090950
I
0.743
GL1
Arabidopsis thaliana
AT3G27920
I
0.741
GL1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_5000559
I
0.741
Bostr.0556s0467
Boechera stricta
Bostr.0556s0467
I
0.731
Bra039065
Brassica rapa
Bra039065
I
0.731
cassava26193.m1
Manihot esculenta
cassava26193.m1
I
0.729
Pm024725
Prunus mume
Pm024725
I
0.724
Bra023486
Brassica rapa
Bra023486
I
0.720
TCM_016886
Theobroma cacao
TCM_016886
I
0.719
VIT_17s0000g08480
Vitis vinifera
VIT_17s0000g08480
I
0.719
Eucgr.I01791
Eucalyptus grandis
Eucgr.I01791
I
0.718
VIT_14s0066g01220
Vitis vinifera
VIT_14s0066g01220
I
0.716
MDP0000578193
Malus domestica
MDP0000578193
I
0.714
Eucgr.J02212
Eucalyptus grandis
Eucgr.J02212
I
0.714
Gorai.007G001800
Gossypium raimondii
Gorai.007G001800
I
0.713
TCM_012057
Theobroma cacao
TCM_012057
I
0.713
SapurV1A.1178s0050
Salix purpurea
SapurV1A.1178s0050
I
0.711
TCM_010360
Theobroma cacao
TCM_010360
I
0.709
MDP0000199965
Malus domestica
MDP0000199965
I
0.709
PRUPE_ppa010908mg
Prunus persica
PRUPE_ppa010908mg
I
0.708
cassava27350.m1
Manihot esculenta
cassava27350.m1
I
0.703
Gorai.004G150800
Gossypium raimondii
Gorai.004G150800
I
0.703
Thhalv10005428m.g
Eutrema salsugineum
Thhalv10005428m.g
I
0.700
MDP0000650225
Malus domestica
MDP0000650225
I
0.697
AMTR_s00024p00224470
Amborella trichopoda
AMTR_s00024p00224470
I
0.691
Aquca_025_00333
Aquilegia coerulea
Aquca_025_00333
I
0.690
POPTR_0012s08190
Populus trichocarpa
POPTR_0012s08190
I
0.689
AMTR_s00024p00224180
Amborella trichopoda
AMTR_s00024p00224180
I
0.689
Cla011528
Citrullus lanatus
Cla011528
I
0.688
Aquca_002_00170
Aquilegia coerulea
Aquca_002_00170
I
0.686
evm.TU.supercontig_124.57
Carica papaya
evm.TU.supercontig_124.57
I
0.685
LjT16O05.150.nd
Lotus japonicus
LjT16O05.150.nd
I
0.682
Eucgr.E01031
Eucalyptus grandis
Eucgr.E01031
I
0.680
Ciclev10017556m.g
Citrus clementina
Ciclev10017556m.g
I
0.680
PDK_20s1554342g001
Phoenix dactylifera
PDK_20s1554342g001
I
0.680
SapurV1A.1404s0020
Salix purpurea
SapurV1A.1404s0020
I
0.678
Eucgr.B00373
Eucalyptus grandis
Eucgr.B00373
I
0.676
LjT02E24.130.nc
Lotus japonicus
LjT02E24.130.nc
I
0.675
VIT_13s0084g00530
Vitis vinifera
VIT_13s0084g00530
I
0.675
MDP0000537324
Malus domestica
MDP0000537324
I
0.674
Gorai.012G061800
Gossypium raimondii
Gorai.012G061800
I
0.672
PK01088.1
Cannabis sativa
PK01088.1
I
0.672
POPTR_0015s08680
Populus trichocarpa
POPTR_0015s08680
I
0.671
cassava2597.m1
Manihot esculenta
cassava2597.m1
I
0.670
VIT_01s0127g00730
Vitis vinifera
VIT_01s0127g00730
I
0.669
MDP0000264051
Malus domestica
MDP0000264051
I
0.667
Pm006678
Prunus mume
Pm006678
I
0.666
PRUPE_ppa014884mg
Prunus persica
PRUPE_ppa014884mg
I
0.666
LjT02E24.110.nc
Lotus japonicus
LjT02E24.110.nc
I
0.666
MDP0000164048
Malus domestica
MDP0000164048
I
0.666
LjT02E24.60.nc
Lotus japonicus
LjT02E24.60.nc
I
0.666
cassava32672.m1
Manihot esculenta
cassava32672.m1
I
0.666
MDP0000915330
Malus domestica
MDP0000915330
I
0.665
PK14784.1
Cannabis sativa
PK14784.1
I
0.665
orange1.1g040841m.g
Citrus sinensis
orange1.1g040841m.g
I
0.665
Ciclev10021571m.g
Citrus clementina
Ciclev10021571m.g
I
0.665
Eucgr.D02390
Eucalyptus grandis
Eucgr.D02390
I
0.665
mgf023205m
Mimulus guttatus
mgf023205m
I
0.665
Aquca_076_00099
Aquilegia coerulea
Aquca_076_00099
I
0.665
Gorai.008G126700
Gossypium raimondii
Gorai.008G126700
I
0.665
evm.TU.supercontig_96.57
Carica papaya
evm.TU.supercontig_96.57
I
0.665
TCM_005112
Theobroma cacao
TCM_005112
I
0.665
gene18691-v1.0-hybrid
Fragaria vesca
gene18691-v1.0-hybrid
I
0.665
VIT_15s0046g00170
Vitis vinifera
VIT_15s0046g00170
I
0.665
AMTR_s00024p00224850
Amborella trichopoda
AMTR_s00024p00224850
I
0.664
Cucsa.304110
Cucumis sativus
Cucsa.304110
I
0.663
GSMUA_Achr3G07950_001
Musa acuminata
GSMUA_Achr3G07950_001
I
0.663
Ciclev10032713m.g
Citrus clementina
Ciclev10032713m.g
I
0.663
GSMUA_Achr10G17610_001
Musa acuminata
GSMUA_Achr10G17610_001
I
0.663
Eucgr.C01374
Eucalyptus grandis
Eucgr.C01374
I
0.663
orange1.1g047269m.g
Citrus sinensis
orange1.1g047269m.g
I
0.663
30068.m002544
Ricinus communis
30068.m002544
I
0.662
Pm018338
Prunus mume
Pm018338
I
0.662
cassava34176.m1
Manihot esculenta
cassava34176.m1
I
0.662
GSMUA_Achr6G04400_001
Musa acuminata
GSMUA_Achr6G04400_001
I
0.662
PRUPE_ppa009439mg
Prunus persica
PRUPE_ppa009439mg
I
0.662
Gorai.004G151000
Gossypium raimondii
Gorai.004G151000
I
0.661
gene31098-v1.0-hybrid
Fragaria vesca
gene31098-v1.0-hybrid
I
0.661