Carubv10020420m.g (Capsella rubella)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Carubv10020420m.g T049413_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10020420m bHLH 279 319

Links

Other bHLH family TFs
Other Capsella rubella TFs

215 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27733.m000033 Ricinus communis 27733.m000033 N 0.875
28405.m000015 Ricinus communis 28405.m000015 N 0.844
29842.m003704 Ricinus communis 29842.m003704 N 0.876
30170.m014085 Ricinus communis 30170.m014085 N 0.852
Al_scaffold_0006_3588 Arabidopsis lyrata Al_scaffold_0006_3588 N 0.841
Aquca_010_00556 Aquilegia coerulea Aquca_010_00556 N 0.852
Aquca_028_00271 Aquilegia coerulea Aquca_028_00271 N 0.876
AT4G05170 Arabidopsis thaliana AT4G05170 N 0.841
BGIOSGA000686 Oryza indica BGIOSGA000686 N 0.876
BGIOSGA017200 Oryza indica BGIOSGA017200 N 0.876
BGIOSGA020126 Oryza indica BGIOSGA020126 N 0.876
BGIOSGA020128 Oryza indica BGIOSGA020128 N 0.876
BHLH110 Arabidopsis thaliana AT1G27660 N 0.852
BHLH112 Arabidopsis thaliana AT1G61660 N 0.914
BHLH123 Arabidopsis thaliana AT3G20640 N 0.875
Bo01052s010 Brassica oleracea Bo01052s010 N 0.875
Bo1g098400 Brassica oleracea Bo1g098400 N 0.914
Bo3g076150 Brassica oleracea Bo3g076150 N 0.875
Bo9g041010 Brassica oleracea Bo9g041010 N 0.914
Bostr.10040s0018 Boechera stricta Bostr.10040s0018 N 0.914
Bostr.19424s0583 Boechera stricta Bostr.19424s0583 N 0.875
Bostr.2983s0058 Boechera stricta Bostr.2983s0058 N 0.841
Bra001798 Brassica rapa Bra001798 N 0.875
Bra027080 Brassica rapa Bra027080 N 0.914
Bra031413 Brassica rapa Bra031413 N 0.914
Bra035761 Brassica rapa Bra035761 N 0.862
Cagra.0316s0001 Capsella grandiflora Cagra.0316s0001 N 0.875
Cagra.1981s0012 Capsella grandiflora Cagra.1981s0012 N 0.841
Cagra.2507s0001 Capsella grandiflora Cagra.2507s0001 N 0.914
Carubv10003683m.g Capsella rubella Carubv10003683m.g N 0.841
Carubv10013632m.g Capsella rubella Carubv10013632m.g N 0.875
cassava13240.valid.m1 Manihot esculenta cassava13240.valid.m1 N 0.876
cassava19346.valid.m1 Manihot esculenta cassava19346.valid.m1 N 0.876
cassava21180.m1 Manihot esculenta cassava21180.m1 N 0.856
cassava28105.m1 Manihot esculenta cassava28105.m1 N 0.875
cassava33658.m1 Manihot esculenta cassava33658.m1 N 0.891
cassava36740.valid.m1 Manihot esculenta cassava36740.valid.m1 N 0.844
cassava36956.valid.m1 Manihot esculenta cassava36956.valid.m1 N 0.875
cassava37772.valid.m1 Manihot esculenta cassava37772.valid.m1 N 0.844
cassava37773.valid.m1 Manihot esculenta cassava37773.valid.m1 N 0.844
cassava42530.valid.m1 Manihot esculenta cassava42530.valid.m1 N 0.852
Ca_00214 Cicer arietinum Ca_00214 N 0.876
Ca_04928 Cicer arietinum Ca_04928 N 0.852
Ca_06936 Cicer arietinum Ca_06936 N 0.875
Ca_19891 Cicer arietinum Ca_19891 N 0.875
Ciclev10001291m.g Citrus clementina Ciclev10001291m.g N 0.852
Ciclev10008228m.g Citrus clementina Ciclev10008228m.g N 0.875
Ciclev10015039m.g Citrus clementina Ciclev10015039m.g N 0.876
Cla003883 Citrullus lanatus Cla003883 N 0.875
Cla021101 Citrullus lanatus Cla021101 N 0.852
Cucsa.059580 Cucumis sativus Cucsa.059580 N 0.875
Cucsa.125970 Cucumis sativus Cucsa.125970 N 0.876
Cucsa.342640 Cucumis sativus Cucsa.342640 N 0.852
Cucsa.359290 Cucumis sativus Cucsa.359290 N 0.852
Eucgr.E03614 Eucalyptus grandis Eucgr.E03614 N 0.876
Eucgr.F03384 Eucalyptus grandis Eucgr.F03384 N 0.875
evm.TU.supercontig_12.1 Carica papaya evm.TU.supercontig_12.1 N 0.875
evm.TU.supercontig_27.162 Carica papaya evm.TU.supercontig_27.162 N 0.876
evm.TU.supercontig_99.32 Carica papaya evm.TU.supercontig_99.32 N 0.852
F775_12027 Aegilops tauschii F775_12027 N 0.876
F775_20405 Aegilops tauschii F775_20405 N 0.876
fgenesh2_kg.1__2924__AT1G27660.1 Arabidopsis lyrata fgenesh2_kg.1__2924__AT1G27660.1 N 0.852
fgenesh2_kg.2__291__AT1G61660.1 Arabidopsis lyrata fgenesh2_kg.2__291__AT1G61660.1 N 0.914
gene03259-v1.0-hybrid Fragaria vesca gene03259-v1.0-hybrid N 0.875
gene11847-v1.0-hybrid Fragaria vesca gene11847-v1.0-hybrid N 0.852
gene30665-v1.0-hybrid Fragaria vesca gene30665-v1.0-hybrid N 0.876
GLYMA06G40760 Glycine max GLYMA06G40760 N 0.875
GLYMA12G17630 Glycine max GLYMA12G17630 N 0.875
GLYMA12G34490 Glycine max GLYMA12G34490 N 0.875
GLYMA13G32320 Glycine max GLYMA13G32320 N 0.876
GLYMA13G36010 Glycine max GLYMA13G36010 N 0.875
GLYMA15G07010 Glycine max GLYMA15G07010 N 0.876
GLYMA16G24661 Glycine max GLYMA16G24661 N 0.863
Gorai.002G079200 Gossypium raimondii Gorai.002G079200 N 0.875
Gorai.006G085000 Gossypium raimondii Gorai.006G085000 N 0.876
Gorai.009G175300 Gossypium raimondii Gorai.009G175300 N 0.876
Gorai.009G199600 Gossypium raimondii Gorai.009G199600 N 0.852
Gorai.009G429100 Gossypium raimondii Gorai.009G429100 N 0.875
Gorai.010G147100 Gossypium raimondii Gorai.010G147100 N 0.876
Gorai.011G020100 Gossypium raimondii Gorai.011G020100 N 0.876
GRMZM2G004732 Zea mays GRMZM2G004732 N 0.876
GRMZM2G155217 Zea mays GRMZM2G155217 N 0.876
GRMZM2G313058 Zea mays GRMZM2G313058 N 0.876
GRMZM2G440529 Zea mays GRMZM2G440529 N 0.876
GSMUA_Achr10G04860_001 Musa acuminata GSMUA_Achr10G04860_001 N 0.876
GSMUA_Achr11G18680_001 Musa acuminata GSMUA_Achr11G18680_001 N 0.876
GSMUA_Achr4G33630_001 Musa acuminata GSMUA_Achr4G33630_001 N 0.876
GSMUA_Achr5G26430_001 Musa acuminata GSMUA_Achr5G26430_001 N 0.876
GSMUA_Achr6G24280_001 Musa acuminata GSMUA_Achr6G24280_001 N 0.852
GSMUA_Achr9G12100_001 Musa acuminata GSMUA_Achr9G12100_001 N 0.876
GSMUA_Achr9G24670_001 Musa acuminata GSMUA_Achr9G24670_001 N 0.876
LjSGA_014369.1 Lotus japonicus LjSGA_014369.1 N 0.876
LjSGA_021413.2 Lotus japonicus LjSGA_021413.2 N 0.850
LPERR01G28830 Leersia perrieri LPERR01G28830 N 0.876
Lus10007613.g Linum usitatissimum Lus10007613.g N 0.876
Lus10018400.g Linum usitatissimum Lus10018400.g N 0.876
Lus10025987.g Linum usitatissimum Lus10025987.g N 0.876
Lus10038550.g Linum usitatissimum Lus10038550.g N 0.875
MDP0000168695 Malus domestica MDP0000168695 N 0.852
MDP0000262020 Malus domestica MDP0000262020 N 0.852
MDP0000295440 Malus domestica MDP0000295440 N 0.875
MDP0000296508 Malus domestica MDP0000296508 N 0.875
MDP0000301999 Malus domestica MDP0000301999 N 0.876
MDP0000687814 Malus domestica MDP0000687814 N 0.852
mgf001258m Mimulus guttatus mgf001258m N 0.875
mgf008488m Mimulus guttatus mgf008488m N 0.876
mgf013138m Mimulus guttatus mgf013138m N 0.852
mgf016565m Mimulus guttatus mgf016565m N 0.876
MLOC_37666 Hordeum vulgare MLOC_37666 N 0.876
MLOC_57076 Hordeum vulgare MLOC_57076 N 0.852
MLOC_72940 Hordeum vulgare MLOC_72940 N 0.876
MTR_2g011070 Medicago truncatula MTR_2g011070 N 0.876
MTR_2g081820 Medicago truncatula MTR_2g081820 N 0.875
MTR_3g112170 Medicago truncatula MTR_3g112170 N 0.852
MTR_8g466800 Medicago truncatula MTR_8g466800 N 0.875
OB04G33270 Oryza brachyantha OB04G33270 N 0.876
OB05G29420 Oryza brachyantha OB05G29420 N 0.876
OB08G14900 Oryza brachyantha OB08G14900 N 0.876
OBART01G33360 Oryza barthii OBART01G33360 N 0.876
OBART04G24870 Oryza barthii OBART04G24870 N 0.876
OBART05G21860 Oryza barthii OBART05G21860 N 0.876
OGLUM01G37590 Oryza glumaepatula OGLUM01G37590 N 0.876
OGLUM04G26290 Oryza glumaepatula OGLUM04G26290 N 0.876
OGLUM05G23050 Oryza glumaepatula OGLUM05G23050 N 0.876
OLONG_006510 Oryza longistaminata OLONG_006510 N 0.876
OLONG_021979 Oryza longistaminata OLONG_021979 N 0.852
OLONG_026655 Oryza longistaminata OLONG_026655 N 0.876
OMERI01G30260 Oryza meridionalis OMERI01G30260 N 0.876
OMERI04G21930 Oryza meridionalis OMERI04G21930 N 0.876
OMERI12G12400 Oryza meridionalis OMERI12G12400 N 0.876
ONIVA01G38120 Oryza nivara ONIVA01G38120 N 0.876
ONIVA03G13290 Oryza nivara ONIVA03G13290 N 0.876
ONIVA05G22530 Oryza nivara ONIVA05G22530 N 0.876
OPUNC01G00360 Oryza punctata OPUNC01G00360 N 0.852
OPUNC01G32440 Oryza punctata OPUNC01G32440 N 0.876
OPUNC04G23980 Oryza punctata OPUNC04G23980 N 0.876
orange1.1g011373m.g Citrus sinensis orange1.1g011373m.g N 0.876
orange1.1g035657m.g Citrus sinensis orange1.1g035657m.g N 0.852
ORGLA04G0213700 Oryza glaberrima ORGLA04G0213700 N 0.876
ORGLA05G0190400 Oryza glaberrima ORGLA05G0190400 N 0.876
ORUFI01G36520 Oryza rufipogon ORUFI01G36520 N 0.876
ORUFI05G23130 Oryza rufipogon ORUFI05G23130 N 0.876
ORUFI06G19010 Oryza rufipogon ORUFI06G19010 N 0.876
OS04G0631600 Oryza sativa OS04G0631600 N 0.876
Pavir.Ea03112 Panicum virgatum Pavir.Ea03112 N 0.876
Pavir.Eb03429 Panicum virgatum Pavir.Eb03429 N 0.876
Pavir.Ga00384 Panicum virgatum Pavir.Ga00384 N 0.876
Pavir.J10443 Panicum virgatum Pavir.J10443 N 0.876
Pavir.J13928 Panicum virgatum Pavir.J13928 N 0.876
Pavir.J25904 Panicum virgatum Pavir.J25904 N 0.876
PDK_20s1457351g001 Phoenix dactylifera PDK_20s1457351g001 N 0.876
PDK_20s1709901g001 Phoenix dactylifera PDK_20s1709901g001 N 0.852
PGSC0003DMG400003746 Solanum tuberosum PGSC0003DMG400003746 N 0.852
PGSC0003DMG400005064 Solanum tuberosum PGSC0003DMG400005064 N 0.875
PGSC0003DMG400013875 Solanum tuberosum PGSC0003DMG400013875 N 0.876
PGSC0003DMG400019236 Solanum tuberosum PGSC0003DMG400019236 N 0.875
PGSC0003DMG400025020 Solanum tuberosum PGSC0003DMG400025020 N 0.875
PK14284.1 Cannabis sativa PK14284.1 N 0.876
PK22680.1 Cannabis sativa PK22680.1 N 0.875
Pm005865 Prunus mume Pm005865 N 0.852
Pm007388 Prunus mume Pm007388 N 0.844
Pm009855 Prunus mume Pm009855 N 0.876
Pm011692 Prunus mume Pm011692 N 0.875
POPTR_0002s03380 Populus trichocarpa POPTR_0002s03380 N 0.852
POPTR_0004s02870 Populus trichocarpa POPTR_0004s02870 N 0.876
POPTR_0005s12150 Populus trichocarpa POPTR_0005s12150 N 0.876
POPTR_0005s25240 Populus trichocarpa POPTR_0005s25240 N 0.852
POPTR_0007s13360 Populus trichocarpa POPTR_0007s13360 N 0.876
POPTR_0011s03560 Populus trichocarpa POPTR_0011s03560 N 0.876
POPTR_0011s13320 Populus trichocarpa POPTR_0011s13320 N 0.875
POPTR_0013s13050 Populus trichocarpa POPTR_0013s13050 N 0.844
POPTR_0019s12530 Populus trichocarpa POPTR_0019s12530 N 0.844
PRUPE_ppa005486mg Prunus persica PRUPE_ppa005486mg N 0.852
PRUPE_ppa005924mg Prunus persica PRUPE_ppa005924mg N 0.876
PRUPE_ppa012528mg Prunus persica PRUPE_ppa012528mg N 0.844
PRUPE_ppa023041mg Prunus persica PRUPE_ppa023041mg N 0.875
SapurV1A.0006s0290 Salix purpurea SapurV1A.0006s0290 N 0.852
SapurV1A.0028s0510 Salix purpurea SapurV1A.0028s0510 N 0.876
SapurV1A.0188s0290 Salix purpurea SapurV1A.0188s0290 N 0.852
SapurV1A.0388s0180 Salix purpurea SapurV1A.0388s0180 N 0.844
SapurV1A.0441s0120 Salix purpurea SapurV1A.0441s0120 N 0.876
SapurV1A.0658s0070 Salix purpurea SapurV1A.0658s0070 N 0.851
SapurV1A.0694s0030 Salix purpurea SapurV1A.0694s0030 N 0.875
SapurV1A.1304s0050 Salix purpurea SapurV1A.1304s0050 N 0.876
SapurV1A.2213s0020 Salix purpurea SapurV1A.2213s0020 N 0.851
Sb03g008830 Sorghum bicolor Sb03g008830 N 0.852
Sb03g036670 Sorghum bicolor Sb03g036670 N 0.876
Sb07g004980 Sorghum bicolor Sb07g004980 N 0.876
Sb09g024720 Sorghum bicolor Sb09g024720 N 0.876
Si001796m.g Setaria italica Si001796m.g N 0.876
Si010139m.g Setaria italica Si010139m.g N 0.876
Si013853m.g Setaria italica Si013853m.g N 0.876
Si022548m.g Setaria italica Si022548m.g N 0.876
Solyc02g079760.2 Solanum lycopersicum Solyc02g079760.2 N 0.876
Solyc02g084880.2 Solanum lycopersicum Solyc02g084880.2 N 0.852
Solyc03g031450.2 Solanum lycopersicum Solyc03g031450.2 N 0.876
Solyc04g080710.2 Solanum lycopersicum Solyc04g080710.2 N 0.852
Solyc07g063830.2 Solanum lycopersicum Solyc07g063830.2 N 0.875
Solyc10g006640.2 Solanum lycopersicum Solyc10g006640.2 N 0.875
TCM_019871 Theobroma cacao TCM_019871 N 0.844
TCM_030051 Theobroma cacao TCM_030051 N 0.876
TCM_031172 Theobroma cacao TCM_031172 N 0.875
TCM_034098 Theobroma cacao TCM_034098 N 0.852
Thhalv10020666m.g Eutrema salsugineum Thhalv10020666m.g N 0.875
Thhalv10023487m.g Eutrema salsugineum Thhalv10023487m.g N 0.914
Thhalv10029319m.g Eutrema salsugineum Thhalv10029319m.g N 0.841
Traes_2AL_70AE1B8B8 Triticum aestivum Traes_2AL_70AE1B8B8 N 0.876
Traes_2BL_A014BCC51 Triticum aestivum Traes_2BL_A014BCC51 N 0.876
Traes_2BL_E82F7902D Triticum aestivum Traes_2BL_E82F7902D N 0.876
Traes_2DL_DCD7B13A8 Triticum aestivum Traes_2DL_DCD7B13A8 N 0.876
TRIUR3_00968 Triticum urartu TRIUR3_00968 N 0.876
VIT_00s0274g00070 Vitis vinifera VIT_00s0274g00070 N 0.876
VIT_04s0023g02410 Vitis vinifera VIT_04s0023g02410 N 0.876
VIT_18s0001g12970 Vitis vinifera VIT_18s0001g12970 N 0.852
VIT_19s0014g04670 Vitis vinifera VIT_19s0014g04670 N 0.875