Gorai.011G172500 (Gossypium raimondii)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Gorai.011G172500 T050102_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH34
M01704_2.00 		Arabidopsis thaliana
VCACGYGH
DCRCGTGB		 PBM
Weirauch et al.(2014)
pTH7212 		0.878 0.808
BHLH34
M06734_2.00 		Arabidopsis thaliana
NNNHNNDNNNNVCACGTGHCN
NGDCACGTGBNNNNHNNDNNN		 Dap-seq
OMalley et al.(2016)
bHLH34_colamp_a 		0.878 0.808
BHLH34
M06735_2.00 		Arabidopsis thaliana
RWRNNNNNCACGTGBNNNNNNNN
NNNNNNNNVCACGTGNNNNNYWY		 Dap-seq
OMalley et al.(2016)
bHLH34_col 		0.878 0.808
BHLH104
M01706_2.00 		Arabidopsis thaliana
GGCACGTGCC
GGCACGTGCC		 PBM
Weirauch et al.(2014)
pTH7365 		0.844 0.788
BHLH104
M06737_2.00 		Arabidopsis thaliana
GVCACGTGBMDDBHNSDNBH
DVNHSNDVHHKVCACGTGBC		 Dap-seq
OMalley et al.(2016)
bHLH104_col_b 		0.844 0.788
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.011G172500.1 bHLH 59 110
Gorai.011G172500.2 bHLH 58 109
Gorai.011G172500.3 bHLH 56 107

Links

Other bHLH family TFs
Other Gossypium raimondii TFs

16 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BHLH104 Arabidopsis thaliana AT4G14410 D 0.844
bHLH104 Arabidopsis lyrata fgenesh2_kg.7__2895__AT4G14410.2 I 0.844
BHLH34 Arabidopsis thaliana AT3G23210 D 0.878
bHLH34 Arabidopsis lyrata fgenesh2_kg.3__2536__AT3G23210.1 I 0.878
Bostr.0597s0053 Boechera stricta Bostr.0597s0053 I 0.844
Bra041033 Brassica rapa Bra041033 I 0.840
Cagra.1718s0002 Capsella grandiflora Cagra.1718s0002 I 0.844
Carubv10005335m.g Capsella rubella Carubv10005335m.g I 0.844
PGSC0003DMG400014432 Solanum tuberosum PGSC0003DMG400014432 I 0.840
PGSC0003DMG400019263 Solanum tuberosum PGSC0003DMG400019263 I 0.843
Solyc10g006510.2 Solanum lycopersicum Solyc10g006510.2 I 0.887
TCM_020866 Theobroma cacao TCM_020866 I 0.879
Thhalv10021177m.g Eutrema salsugineum Thhalv10021177m.g I 0.863
Thhalv10025927m.g Eutrema salsugineum Thhalv10025927m.g I 0.844
VIT_14s0081g00720 Vitis vinifera VIT_14s0081g00720 I 0.854