Pavir.Fa00493 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.Fa00493 T050769_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G42280
M06733_2.00 		Arabidopsis thaliana
DNCMACTTGYH
DRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH130_col_a 		0.867 0.961
BHLH122
M06724_2.00 		Arabidopsis thaliana
NNDNCMACTTGNNH
DNNCAAGTKGNHNN		 Dap-seq
OMalley et al.(2016)
bHLH122_col100_a 		0.844 0.902
BHLH122
M06725_2.00 		Arabidopsis thaliana
DNCMACTTGYN
NRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH122_colamp_a 		0.844 0.902
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fa00493.1.p bHLH 315 365

Links

Other bHLH family TFs
Other Panicum virgatum TFs

80 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29738.m001043 Ricinus communis 29738.m001043 I
AMTR_s00002p00019320 Amborella trichopoda AMTR_s00002p00019320 I
AMTR_s00010p00144270 Amborella trichopoda AMTR_s00010p00144270 I
Aquca_002_01095 Aquilegia coerulea Aquca_002_01095 I
Aquca_007_00571 Aquilegia coerulea Aquca_007_00571 N
BGIOSGA026937 Oryza indica BGIOSGA026937 I
BGIOSGA029777 Oryza indica BGIOSGA029777 I
BHLH30 Arabidopsis thaliana AT1G68810 I
BHLH32 Arabidopsis thaliana AT3G25710 I
BHLH32 Arabidopsis lyrata fgenesh2_kg.5__324__AT3G25710.1 I
Bo2g138630 Brassica oleracea Bo2g138630 I
Bo6g095860 Brassica oleracea Bo6g095860 I
Bo6g108270 Brassica oleracea Bo6g108270 I
Bo7g081980 Brassica oleracea Bo7g081980 I
Bostr.0556s0241 Boechera stricta Bostr.0556s0241 I
Bostr.26959s0001 Boechera stricta Bostr.26959s0001 I
Bra004015 Brassica rapa Bra004015 I
Bra004338 Brassica rapa Bra004338 I
Bra025158 Brassica rapa Bra025158 I
Bra026510 Brassica rapa Bra026510 I
BRADI1G67500 Brachypodium distachyon BRADI1G67500 I
BRADI3G36610 Brachypodium distachyon BRADI3G36610 N
BRADI4G29990 Brachypodium distachyon BRADI4G29990 N
Cagra.0417s0002 Capsella grandiflora Cagra.0417s0002 I
Cagra.1157s0003 Capsella grandiflora Cagra.1157s0003 I
Carubv10017470m.g Capsella rubella Carubv10017470m.g I
Carubv10020515m.g Capsella rubella Carubv10020515m.g I
cassava16550.m1 Manihot esculenta cassava16550.m1 I
cassava34286.m1 Manihot esculenta cassava34286.m1 N
cassava46299.m1 Manihot esculenta cassava46299.m1 I
Ca_08440 Cicer arietinum Ca_08440 I
Ca_14981 Cicer arietinum Ca_14981 N
Ca_18110 Cicer arietinum Ca_18110 N
Ca_24775 Cicer arietinum Ca_24775 I
chr2.CM0749.390.nc Lotus japonicus chr2.CM0749.390.nc I
Ciclev10002205m.g Citrus clementina Ciclev10002205m.g N
Ciclev10020323m.g Citrus clementina Ciclev10020323m.g I
Ciclev10031900m.g Citrus clementina Ciclev10031900m.g I
Cla000223 Citrullus lanatus Cla000223 I
Cla020671 Citrullus lanatus Cla020671 I
Cla022500 Citrullus lanatus Cla022500 N
Cucsa.160650 Cucumis sativus Cucsa.160650 N
Cucsa.283920 Cucumis sativus Cucsa.283920 I
Eucgr.G02351 Eucalyptus grandis Eucgr.G02351 I
evm.TU.supercontig_53.118 Carica papaya evm.TU.supercontig_53.118 I
evm.TU.supercontig_55.51 Carica papaya evm.TU.supercontig_55.51 N
evm.TU.supercontig_65.63 Carica papaya evm.TU.supercontig_65.63 N
F775_10096 Aegilops tauschii F775_10096 I
fgenesh2_kg.2__1138__AT1G68810.1 Arabidopsis lyrata fgenesh2_kg.2__1138__AT1G68810.1 I
GLYMA01G02930 Glycine max GLYMA01G02930 N
GLYMA01G22530 Glycine max GLYMA01G22530 I
GLYMA02G11190 Glycine max GLYMA02G11190 I
GLYMA02G37720 Glycine max GLYMA02G37720 N
GLYMA10G34910 Glycine max GLYMA10G34910 I
GLYMA14G36010 Glycine max GLYMA14G36010 N
GLYMA17G19570 Glycine max GLYMA17G19570 I
GLYMA20G32660 Glycine max GLYMA20G32660 I
Gorai.008G186700 Gossypium raimondii Gorai.008G186700 I
Gorai.009G230000 Gossypium raimondii Gorai.009G230000 N
Gorai.012G124100 Gossypium raimondii Gorai.012G124100 N
Gorai.013G079600 Gossypium raimondii Gorai.013G079600 I
GRMZM2G043854 Zea mays GRMZM2G043854 I
GRMZM2G176141 Zea mays GRMZM2G176141 N
GRMZM2G526668 Zea mays GRMZM2G526668 I
GSMUA_Achr11G13440_001 Musa acuminata GSMUA_Achr11G13440_001 I
GSMUA_Achr1G21280_001 Musa acuminata GSMUA_Achr1G21280_001 I
GSMUA_Achr6G30610_001 Musa acuminata GSMUA_Achr6G30610_001 I
GSMUA_Achr7G07280_001 Musa acuminata GSMUA_Achr7G07280_001 I
LPERR03G10060 Leersia perrieri LPERR03G10060 I
LPERR08G12910 Leersia perrieri LPERR08G12910 I
LPERR09G06880 Leersia perrieri LPERR09G06880 I
Lus10021711.g Linum usitatissimum Lus10021711.g I
Lus10034271.g Linum usitatissimum Lus10034271.g I
Lus10035056.g Linum usitatissimum Lus10035056.g I
Lus10041493.g Linum usitatissimum Lus10041493.g I
MDP0000271420 Malus domestica MDP0000271420 I
MDP0000319726 Malus domestica MDP0000319726 I
MDP0000562627 Malus domestica MDP0000562627 N
mg025182m Mimulus guttatus mg025182m I
mgf017635m Mimulus guttatus mgf017635m I
MLOC_12832 Hordeum vulgare MLOC_12832 N
MLOC_66385 Hordeum vulgare MLOC_66385 I
MTR_1g093750 Medicago truncatula MTR_1g093750 I
MTR_5g066080 Medicago truncatula MTR_5g066080 N
OB03G21490 Oryza brachyantha OB03G21490 I
OB09G16590 Oryza brachyantha OB09G16590 N
OBART03G11320 Oryza barthii OBART03G11320 I
OBART08G15650 Oryza barthii OBART08G15650 I
OGLUM03G11280 Oryza glumaepatula OGLUM03G11280 I
OGLUM08G16400 Oryza glumaepatula OGLUM08G16400 I
OGLUM09G10310 Oryza glumaepatula OGLUM09G10310 N
OLONG_004075 Oryza longistaminata OLONG_004075 I
OLONG_011765 Oryza longistaminata OLONG_011765 N
OMERI08G12930 Oryza meridionalis OMERI08G12930 I
OMERI09G07780 Oryza meridionalis OMERI09G07780 I
ONIVA03G12280 Oryza nivara ONIVA03G12280 I
ONIVA08G16750 Oryza nivara ONIVA08G16750 I
ONIVA09G09550 Oryza nivara ONIVA09G09550 I
OPUNC08G13730 Oryza punctata OPUNC08G13730 I
orange1.1g022782m.g Citrus sinensis orange1.1g022782m.g I
orange1.1g024930m.g Citrus sinensis orange1.1g024930m.g N
orange1.1g026943m.g Citrus sinensis orange1.1g026943m.g I
orange1.1g037785m.g Citrus sinensis orange1.1g037785m.g I
ORGLA03G0109100 Oryza glaberrima ORGLA03G0109100 I
ORGLA08G0137400 Oryza glaberrima ORGLA08G0137400 I
ORUFI03G11650 Oryza rufipogon ORUFI03G11650 I
ORUFI08G17560 Oryza rufipogon ORUFI08G17560 I
ORUFI09G10670 Oryza rufipogon ORUFI09G10670 I
OS03G0260600 Oryza sativa OS03G0260600 I
OS08G0432800 Oryza sativa OS08G0432800 I
OS09G0410700 Oryza sativa OS09G0410700 I
Pavir.Ba01821 Panicum virgatum Pavir.Ba01821 N
Pavir.Bb02155 Panicum virgatum Pavir.Bb02155 N
Pavir.Ib01099 Panicum virgatum Pavir.Ib01099 I
PGSC0003DMG400000824 Solanum tuberosum PGSC0003DMG400000824 I
PGSC0003DMG400007457 Solanum tuberosum PGSC0003DMG400007457 I
PGSC0003DMG400023577 Solanum tuberosum PGSC0003DMG400023577 N
PK01498.1 Cannabis sativa PK01498.1 N
PK07858.1 Cannabis sativa PK07858.1 D
Pm002160 Prunus mume Pm002160 N
Pm029004 Prunus mume Pm029004 I
POPTR_0008s11490 Populus trichocarpa POPTR_0008s11490 I
POPTR_0010s14010 Populus trichocarpa POPTR_0010s14010 I
PRUPE_ppa019406mg Prunus persica PRUPE_ppa019406mg I
PRUPE_ppa019545mg Prunus persica PRUPE_ppa019545mg N
PRUPE_ppa026166mg Prunus persica PRUPE_ppa026166mg N
SapurV1A.0079s0530 Salix purpurea SapurV1A.0079s0530 I
SapurV1A.0304s0070 Salix purpurea SapurV1A.0304s0070 I
SapurV1A.3056s0010 Salix purpurea SapurV1A.3056s0010 I
Sb01g040450 Sorghum bicolor Sb01g040450 I
Sb02g024460 Sorghum bicolor Sb02g024460 N
Sb07g021170 Sorghum bicolor Sb07g021170 I
SELMODRAFT_412681 Selaginella moellendorffii SELMODRAFT_412681 I
SELMODRAFT_417246 Selaginella moellendorffii SELMODRAFT_417246 I
SELMODRAFT_46532 Selaginella moellendorffii SELMODRAFT_46532 I
SELMODRAFT_56610 Selaginella moellendorffii SELMODRAFT_56610 I
Si013911m.g Setaria italica Si013911m.g I
Si030496m.g Setaria italica Si030496m.g N
Si039730m.g Setaria italica Si039730m.g I
Solyc04g006990.2 Solanum lycopersicum Solyc04g006990.2 I
Solyc04g014360.2 Solanum lycopersicum Solyc04g014360.2 N
Solyc04g078690.2 Solanum lycopersicum Solyc04g078690.2 I
Solyc05g009880.2 Solanum lycopersicum Solyc05g009880.2 I
Solyc07g005400.2 Solanum lycopersicum Solyc07g005400.2 I
TCM_000997 Theobroma cacao TCM_000997 N
TCM_011873 Theobroma cacao TCM_011873 I
Thhalv10004524m.g Eutrema salsugineum Thhalv10004524m.g I
Thhalv10018758m.g Eutrema salsugineum Thhalv10018758m.g I
Traes_4AS_DD16F89E7 Triticum aestivum Traes_4AS_DD16F89E7 I
Traes_4BL_A2B32FCEE Triticum aestivum Traes_4BL_A2B32FCEE I
Traes_4DL_7BD3165FB Triticum aestivum Traes_4DL_7BD3165FB I
Traes_5BL_CF90A7CAE Triticum aestivum Traes_5BL_CF90A7CAE N
TRIUR3_31897 Triticum urartu TRIUR3_31897 I
VIT_01s0011g02940 Vitis vinifera VIT_01s0011g02940 I
VIT_18s0001g07410 Vitis vinifera VIT_18s0001g07410 N