CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

GA18349 *(Drosophila pseudoobscura)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00096 (zf-C2H2)	IPR007087	FBgn0078354	T114733_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
lmd M00564_2.00	Drosophila melanogaster	NNCCCCCCVS	SBGGGGGGNN	PBM Busser et al.(2012b) Lmd	0.827	0.982
lmd M03702_2.00	Drosophila melanogaster	BVCCCCCCRCNDHSH	DSDHNGYGGGGGGBV	SELEX Nitta et al.(2015) lmd_1	0.827	0.982
lmd M06157_2.00	Drosophila melanogaster	MVKVCCCCCYRCNG	CNGYRGGGGGBMBK	B1H Zhu et al.(2011) lmd_SANGER_5_FBgn0039039	0.827	0.982
lmd M06158_2.00	Drosophila melanogaster	NNNMCCCCCYRSNRN	NYNSYRGGGGGKNNN	B1H Zhu et al.(2011) lmd_SOLEXA_5_FBgn0039039	0.827	0.982
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
FBpp0283457	C2H2 ZF	451	476	LICRWTGCNVEFPHQQAFVEHIEKCH
FBpp0283457	C2H2 ZF	485	512	FSCFWLDCPRRYKPFNARYKLLIHMRVH
FBpp0283457	C2H2 ZF	519	542	KCPFPGCNKAFSRLENLKIHQRSH
FBpp0283457	C2H2 ZF	548	572	YGCQYKGCLKAFSNSSDRAKHQRTH
FBpp0283457	C2H2 ZF	578	602	YACQLPGCTKRYTDPSSLRKHVKNH

Links
Other C2H2 ZF family TFs
Other *Drosophila pseudoobscura* TFs