Bo9g026020 (Brassica oleracea)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 Bo9g026020 T191921_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA20
M06884_2.00 		Arabidopsis thaliana
GATCBGAT
ATCVGATC		 Dap-seq
OMalley et al.(2016)
GATA20_col_a 		0.862 0.944
GATA20
M06885_2.00 		Arabidopsis thaliana
HNGATCNGATBND
HNVATCNGATCND		 Dap-seq
OMalley et al.(2016)
GATA20_colamp_a 		0.862 0.944
GATA19
M06893_2.00 		Arabidopsis thaliana
BNGATCBGATY
RATCVGATCNV		 Dap-seq
OMalley et al.(2016)
GATA19_col_a 		0.820 0.889
GATA19
M06894_2.00 		Arabidopsis thaliana
HNGATCBGATY
RATCVGATCND		 Dap-seq
OMalley et al.(2016)
GATA19_colamp_a 		0.820 0.889
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo9g026020.1 GATA 89 124

Links

Other GATA family TFs
Other Brassica oleracea TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29841.m002855 Ricinus communis 29841.m002855 N
Aquca_020_00103 Aquilegia coerulea Aquca_020_00103 N
Bo8g066360 Brassica oleracea Bo8g066360 N
Bostr.28625s0113 Boechera stricta Bostr.28625s0113 N
Bostr.7128s0147 Boechera stricta Bostr.7128s0147 N
Bra016665 Brassica rapa Bra016665 N
Bra021136 Brassica rapa Bra021136 N
Bra027207 Brassica rapa Bra027207 N
Cagra.2238s0088 Capsella grandiflora Cagra.2238s0088 N
Carubv10009517m.g Capsella rubella Carubv10009517m.g N
cassava6704.valid.m1 Manihot esculenta cassava6704.valid.m1 N
Ca_06682 Cicer arietinum Ca_06682 N
Ca_19192 Cicer arietinum Ca_19192 N
Ciclev10025929m.g Citrus clementina Ciclev10025929m.g N
Cla012920 Citrullus lanatus Cla012920 N
Cucsa.096390 Cucumis sativus Cucsa.096390 N
gene15686-v1.0-hybrid Fragaria vesca gene15686-v1.0-hybrid N
GLYMA04G23780 Glycine max GLYMA04G23780 N
GLYMA04G23980 Glycine max GLYMA04G23980 N
GLYMA06G25310 Glycine max GLYMA06G25310 N
GLYMA13G44230 Glycine max GLYMA13G44230 N
GLYMA15G01040 Glycine max GLYMA15G01040 N
Gorai.006G101100 Gossypium raimondii Gorai.006G101100 N
Gorai.011G083900 Gossypium raimondii Gorai.011G083900 N
Lus10019406.g Linum usitatissimum Lus10019406.g N
MBD10 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001305 N
MBD10 Arabidopsis thaliana AT1G15340 N
MBD11 Arabidopsis thaliana AT3G15790 N
MBD11 Arabidopsis lyrata scaffold_301848.1 N
orange1.1g022816m.g Citrus sinensis orange1.1g022816m.g N
PGSC0003DMG400002913 Solanum tuberosum PGSC0003DMG400002913 N
PK24888.1 Cannabis sativa PK24888.1 N
Pm013666 Prunus mume Pm013666 N
PRUPE_ppa009989mg Prunus persica PRUPE_ppa009989mg N
Solyc12g009590.1 Solanum lycopersicum Solyc12g009590.1 N
Thhalv10007967m.g Eutrema salsugineum Thhalv10007967m.g N
VIT_09s0002g06870 Vitis vinifera VIT_09s0002g06870 N