PBX3 (Oryctolagus cuniculus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSOCUG00000012302 T213160_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Pbx3
M09205_2.00 		Mus musculus
BBBTGATTGRYNDN
NHNRYCAATCAVVV		 Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A 		0.867 1.000
Pbx1
M00513_2.00 		Mus musculus
NNDKANNNN
NNNNTMHNN		 PBM
Berger et al.(2008)
Pbx1_3203 		0.865 0.965
PBX1
M05362_2.00 		Homo sapiens
NTGATKGAYR
YRTCMATCAN		 SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX 		0.865 0.965
PBX1
M05364_2.00 		Homo sapiens
DTGMTKGRYN
NRYCMAKCAH		 SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX 		0.865 0.965
PBX1
M02685_2.00 		Homo sapiens
WWTGATTGATND
HNATCAATCAWW		 SELEX
Mathelier et al.(2014)
MA0070.1 		0.865 0.965
PBX2
M08134_2.00 		Homo sapiens
NWGAKTGACABN
NVTGTCAMTCWN		 ChIP-seq
Mathelier et al.(2014)
MA1113.1 		0.865 0.965
PBX1
M09164_2.00 		Homo sapiens
DGABTGRCRG
CYGYCAVTCH		 Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A 		0.865 0.965
PBX2
M09165_2.00 		Homo sapiens
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C 		0.865 0.965
Pbx2
M09199_2.00 		Mus musculus
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C 		0.865 0.965
PBX1
M09561_2.00 		Homo sapiens
TGABTGACAGSC
GSCTGTCAVTCA		 Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007 		0.865 0.965
PBX1
M10748_2.00 		Homo sapiens
WTKATTRDT
AHYAATMAW		 Transfac
Matys et al.(2006)
V$PBX1_01 		0.865 0.965
PBX1
M10749_2.00 		Homo sapiens
DNHTTGATTGATKDB
VHMATCAATCAADNH		 Transfac
Matys et al.(2006)
V$PBX1_02 		0.865 0.965
PBX1
M10750_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_03 		0.865 0.965
PBX1
M10751_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_05 		0.865 0.965
PBX1
M10752_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_10 		0.865 0.965
PBX1
M10753_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_Q3 		0.865 0.965
PBX1
M05363_2.00 		Homo sapiens
DTGAKKGAYG
CRTCMMTCAH		 SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX 		0.865 0.965
PBX1
M05365_2.00 		Homo sapiens
MRTCAATCMH
DKGATTGAYK		 SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX 		0.865 0.965
pbx4
M02110_2.00 		Tetraodon nigroviridis
TTGAYGDV
BHCRTCAA		 PBM
Weirauch et al.(2014)
pTH6425 		0.865 0.947
exd
M06487_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Mathelier et al.(2014)
MA0222.1 		0.820 0.947
exd
M06243_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611 		0.820 0.947
exd
M06244_2.00 		Drosophila melanogaster
NWRNWYNAAA
TTTNRWNYWN		 B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611 		0.820 0.947
exd
M06245_2.00 		Drosophila melanogaster
NDTGAYRW
WYRTCAHN		 B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611 		0.820 0.947
exd
M06246_2.00 		Drosophila melanogaster
NNDTGAYR
YRTCAHNN		 B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611 		0.820 0.947
PBX4
M00277_2.00 		Homo sapiens
NNDDWHDNNN
NNNHDWHHNN		 PBM
Barrera et al.(2016)
PBX4_REF 		0.813 0.877
PBX4
M10649_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX4_01 		0.813 0.877
CBG10835
M01243_2.00 		Caenorhabditis briggsae
NNTKAYDNN
NNHRTMANN		 PBM
Lambert et al.(2019)
pTH11444 		0.691 0.579
PBX4
M00276_2.00 		Homo sapiens
NYTAATTADNN
NNHTAATTARN		 PBM
Barrera et al.(2016)
PBX4_R215Q 		0.675 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000010589 Homeodomain 161 220

Links

Other Homeodomain family TFs
Other Oryctolagus cuniculus TFs

436 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29738.m001050 Ricinus communis 29738.m001050 I
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I
ARF14 Arabidopsis thaliana AT3G25730 D
BGIOSGA000982 Oryza indica BGIOSGA000982 I
BGIOSGA002747 Oryza indica BGIOSGA002747 I
BGIOSGA002748 Oryza indica BGIOSGA002748 I
BGIOSGA002753 Oryza indica BGIOSGA002753 I
BGIOSGA020315 Oryza indica BGIOSGA020315 I
Bo2g061320 Brassica oleracea Bo2g061320 I
Bo2g138650 Brassica oleracea Bo2g138650 I
Bo3g138550 Brassica oleracea Bo3g138550 I
Bo5g015210 Brassica oleracea Bo5g015210 I
Bo5g043120 Brassica oleracea Bo5g043120 I
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I
Bra011002 Brassica rapa Bra011002 I
Bra019821 Brassica rapa Bra019821 I
Bra024735 Brassica rapa Bra024735 I
Bra026509 Brassica rapa Bra026509 I
Bra026917 Brassica rapa Bra026917 I
Bra038346 Brassica rapa Bra038346 I
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I
Carubv10009612m.g Capsella rubella Carubv10009612m.g I
Carubv10019207m.g Capsella rubella Carubv10019207m.g I
Carubv10020536m.g Capsella rubella Carubv10020536m.g I
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I
Ca_08436 Cicer arietinum Ca_08436 I
Ca_24123 Cicer arietinum Ca_24123 I
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I
Cla000872 Citrullus lanatus Cla000872 I
Cla020675 Citrullus lanatus Cla020675 I
Cucsa.147340 Cucumis sativus Cucsa.147340 I
Cucsa.283870 Cucumis sativus Cucsa.283870 I
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I
F775_20035 Aegilops tauschii F775_20035 N
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I
GLYMA01G22260 Glycine max GLYMA01G22260 I
GLYMA02G11060 Glycine max GLYMA02G11060 I
GLYMA10G34760 Glycine max GLYMA10G34760 I
GLYMA20G32730 Glycine max GLYMA20G32730 I
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I
GRMZM2G059939 Zea mays GRMZM2G059939 I
GRMZM2G159592 Zea mays GRMZM2G159592 I
GRMZM2G169654 Zea mays GRMZM2G169654 I
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I
LPERR01G02360 Leersia perrieri LPERR01G02360 I
LPERR01G02380 Leersia perrieri LPERR01G02380 I
LPERR01G23470 Leersia perrieri LPERR01G23470 I
LPERR05G20600 Leersia perrieri LPERR05G20600 I
Lus10021707.g Linum usitatissimum Lus10021707.g I
Lus10041487.g Linum usitatissimum Lus10041487.g I
MDP0000128924 Malus domestica MDP0000128924 I
MDP0000939633 Malus domestica MDP0000939633 I
mgf019592m Mimulus guttatus mgf019592m I
MLOC_5512 Hordeum vulgare MLOC_5512 I
MLOC_56567 Hordeum vulgare MLOC_56567 I
MLOC_63261 Hordeum vulgare MLOC_63261 I
MLOC_75135 Hordeum vulgare MLOC_75135 I
MLOC_7940 Hordeum vulgare MLOC_7940 I
MTR_1g093600 Medicago truncatula MTR_1g093600 I
MTR_5g053920 Medicago truncatula MTR_5g053920 I
OB01G12600 Oryza brachyantha OB01G12600 I
OBART01G02610 Oryza barthii OBART01G02610 I
OBART01G27360 Oryza barthii OBART01G27360 I
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I
OMERI01G02480 Oryza meridionalis OMERI01G02480 I
OMERI01G02500 Oryza meridionalis OMERI01G02500 I
OMERI01G25110 Oryza meridionalis OMERI01G25110 I
OMERI05G22110 Oryza meridionalis OMERI05G22110 I
ONIVA01G02970 Oryza nivara ONIVA01G02970 I
ONIVA01G02990 Oryza nivara ONIVA01G02990 I
ONIVA01G31290 Oryza nivara ONIVA01G31290 I
ONIVA05G26000 Oryza nivara ONIVA05G26000 I
OPUNC01G02240 Oryza punctata OPUNC01G02240 I
OPUNC01G27280 Oryza punctata OPUNC01G27280 I
OPUNC05G22370 Oryza punctata OPUNC05G22370 I
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I
OS01G0140700 Oryza sativa OS01G0140700 I
OS01G0141000 Oryza sativa OS01G0141000 I
OS01G0693400 Oryza sativa OS01G0693400 I
OS05G0549800 Oryza sativa OS05G0549800 I
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I
Pavir.J00384 Panicum virgatum Pavir.J00384 I
Pavir.J13012 Panicum virgatum Pavir.J13012 I
Pavir.J23476 Panicum virgatum Pavir.J23476 I
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I
PK15652.1 Cannabis sativa PK15652.1 I
Pm029015 Prunus mume Pm029015 I
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I
RAV1 Arabidopsis thaliana AT1G13260 D
RAV1 Arabidopsis lyrata scaffold_101479.1 I
RAV2 Arabidopsis thaliana AT1G68840 D
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I
Sb03g006590 Sorghum bicolor Sb03g006590 I
Sb03g031860 Sorghum bicolor Sb03g031860 I
Sb09g004140 Sorghum bicolor Sb09g004140 N
Sb09g027530 Sorghum bicolor Sb09g027530 I
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I
Si001909m.g Setaria italica Si001909m.g I
Si004045m.g Setaria italica Si004045m.g I
Si012228m.g Setaria italica Si012228m.g N
Si024576m.g Setaria italica Si024576m.g I
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I
TCM_011862 Theobroma cacao TCM_011862 I
TEM1 Arabidopsis lyrata scaffold_102941.1 I
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I
TRIUR3_24851 Triticum urartu TRIUR3_24851 I
TRIUR3_27886 Triticum urartu TRIUR3_27886 I
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I