cassava34877.m1 (Manihot esculenta)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 cassava34877.m1 T250473_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASIL2
M06973_2.00 		Arabidopsis thaliana
TCRCCGGARAH
DTYTCCGGYGA		 Dap-seq
OMalley et al.(2016)
At3g14180_col 		0.893 0.803
ASIL1
M02264_2.00 		Arabidopsis thaliana
NNDHCGDHNN
NNDHCGDHNN		 PBM
Weirauch et al.(2014)
pTH7464 		0.818 0.606
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava34877.m1 MADF 79 156

Links

Other MADF family TFs
Other Manihot esculenta TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29727.m000472 Ricinus communis 29727.m000472 I 0.923
29814.m000741 Ricinus communis 29814.m000741 I 0.855
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.926
AMTR_s00007p00263040 Amborella trichopoda AMTR_s00007p00263040 N 0.844
AMTR_s00021p00065350 Amborella trichopoda AMTR_s00021p00065350 I 0.818
Aquca_020_00550 Aquilegia coerulea Aquca_020_00550 I 0.934
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.848
ASIL1 Arabidopsis lyrata fgenesh2_kg.1__4489__AT1G54060.1 I 0.858
ASIL1 Arabidopsis thaliana AT1G54060 D 0.818
ASIL2 Arabidopsis thaliana AT3G14180 D 0.893
Bo1g134590 Brassica oleracea Bo1g134590 I 0.863
Bo6g050870 Brassica oleracea Bo6g050870 I 0.823
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I 0.910
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.893
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I 0.858
Bra014370 Brassica rapa Bra014370 I 0.839
Bra037960 Brassica rapa Bra037960 I 0.831
Cagra.0769s0020 Capsella grandiflora Cagra.0769s0020 I 0.843
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I 0.856
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.893
Carubv10009310m.g Capsella rubella Carubv10009310m.g I 0.843
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.893
Carubv10015798m.g Capsella rubella Carubv10015798m.g I 0.842
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I 0.923
cassava47424.m1 Manihot esculenta cassava47424.m1 I 0.916
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.967
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.849
Cla015773 Citrullus lanatus Cla015773 I 0.958
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.958
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.860
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I 0.901
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.893
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.945
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.885
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.952
GLYMA16G01370 Glycine max GLYMA16G01370 I 0.890
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.968
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.964
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I 0.844
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.859
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.836
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N 0.868
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.924
Lus10020652.g Linum usitatissimum Lus10020652.g I 0.865
MDP0000097759 Malus domestica MDP0000097759 N 0.858
MDP0000255104 Malus domestica MDP0000255104 I 0.942
MDP0000281471 Malus domestica MDP0000281471 I 0.942
MDP0000943251 Malus domestica MDP0000943251 N 0.842
mgf000047m Mimulus guttatus mgf000047m I 0.841
mgf006505m Mimulus guttatus mgf006505m I 0.883
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.917
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.967
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.849
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.873
PGSC0003DMG400037972 Solanum tuberosum PGSC0003DMG400037972 I 0.939
PK22475.1 Cannabis sativa PK22475.1 N 0.904
Pm013209 Prunus mume Pm013209 I 0.943
POPTR_0001s06330 Populus trichocarpa POPTR_0001s06330 N 0.877
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.945
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.836
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I 0.834
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.943
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.934
SapurV1A.0504s0110 Salix purpurea SapurV1A.0504s0110 N 0.877
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.854
SapurV1A.2810s0010 Salix purpurea SapurV1A.2810s0010 N 0.877
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I 0.958
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.873
TCM_029209 Theobroma cacao TCM_029209 I 0.921
TCM_042467 Theobroma cacao TCM_042467 N 0.893
Thhalv10011582m.g Eutrema salsugineum Thhalv10011582m.g I 0.845
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.893
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.910
VIT_09s0002g00720 Vitis vinifera VIT_09s0002g00720 N 0.901