Thhalv10002353m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10002353m.g T259099_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10002353m MADS box 10 55

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCEY_13226 Ancylostoma ceylanicum ANCCEY_13226 I 0.000
CBG01235 Caenorhabditis briggsae CBG01235 I 0.000
CBG01243 Caenorhabditis briggsae CBG01243 I 0.000
CBG01245 Caenorhabditis briggsae CBG01245 N 0.000
CBG01246 Caenorhabditis briggsae CBG01246 N 0.000
CBG01250 Caenorhabditis briggsae CBG01250 D 0.000
CBG01251 Caenorhabditis briggsae CBG01251 I 0.000
CBG01353 Caenorhabditis briggsae CBG01353 I 0.000
CBG06387 Caenorhabditis briggsae CBG06387 I 0.000
CBG15881 Caenorhabditis briggsae CBG15881 I 0.000
CBG17906 Caenorhabditis briggsae CBG17906 I 0.000
CBN03087 Caenorhabditis brenneri CBN03087 I 0.000
CBN15241 Caenorhabditis brenneri CBN15241 I 0.000
CJA19466 Caenorhabditis japonica CJA19466 I 0.000
CRE05044 Caenorhabditis remanei CRE05044 I 0.000
CRE08749 Caenorhabditis remanei CRE08749 I 0.000
CRE08751 Caenorhabditis remanei CRE08751 I 0.000
CRE08754 Caenorhabditis remanei CRE08754 I 0.000
CRE08755 Caenorhabditis remanei CRE08755 I 0.000
CRE08760 Caenorhabditis remanei CRE08760 I 0.000
CRE18698 Caenorhabditis remanei CRE18698 I 0.000
CRE18699 Caenorhabditis remanei CRE18699 I 0.000
CRE19030 Caenorhabditis remanei CRE19030 N 0.000
CRE30948 Caenorhabditis remanei CRE30948 I 0.000
HCOI00483700 Haemonchus contortus HCOI00483700 I 0.000
HPLM_0000277901 Haemonchus placei HPLM_0000277901 I 0.000
L889_g6798 Steinernema feltiae L889_g6798 I 0.000
L889_g6799 Steinernema feltiae L889_g6799 I 0.000
L898_g19019 Steinernema monticolum L898_g19019 I 0.000
NBR_0001218401 Nippostrongylus brasiliensis NBR_0001218401 I 0.000
nhr-130 Caenorhabditis elegans WBGene00003720 I 0.000
nhr-133 Caenorhabditis elegans WBGene00003723 I 0.000
nhr-182 Caenorhabditis elegans WBGene00018265 D 0.000
nhr-183 Caenorhabditis elegans WBGene00018266 I 0.000
nhr-184 Caenorhabditis elegans WBGene00018415 I 0.000
nhr-190 Caenorhabditis elegans WBGene00018622 I 0.000
nhr-212 Caenorhabditis elegans WBGene00020153 I 0.000
SVUK_0002058501 Strongylus vulgaris SVUK_0002058501 I 0.000
WBGene00003673 Caenorhabditis elegans WBGene00003673 I 0.000