Bra022888 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra022888 T267949_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB101
M07051_2.00 		Arabidopsis thaliana
NWHHNWAACCGWWHH
DDWWCGGTTWNDDWN		 Dap-seq
OMalley et al.(2016)
MYB101_col_a 		0.893 0.957
MYB101
M07052_2.00 		Arabidopsis thaliana
DHHHVTAACYGWHWN
NWDWCRGTTABDDDH		 Dap-seq
OMalley et al.(2016)
MYB101_colamp_a 		0.893 0.957
Q9FR42_TOBAC
M11076_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBAS1_01 		0.800 0.828
myb.Ph3
M02704_2.00 		Petunia x hybrida
WAACNGTYW
WRACNGTTW		 SELEX
Mathelier et al.(2014)
MA0054.1 		0.799 0.828
myb.Ph3
M11070_2.00 		Petunia x hybrida
RTAACSGTTTYHW
WDRAAACSGTTAY		 Transfac
Matys et al.(2006)
P$MYBPH3_01 		0.799 0.828
myb.Ph3
M11071_2.00 		Petunia x hybrida
STAACTAACTHHH
DDDAGTTAGTTAS		 Transfac
Matys et al.(2006)
P$MYBPH3_02 		0.799 0.828
Gam1
M02703_2.00 		Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN		 SELEX
Mathelier et al.(2014)
MA0034.1 		0.791 0.806
Gam1
M11061_2.00 		Hordeum vulgare
YAACSRHM
KDYSGTTR		 Transfac
Matys et al.(2006)
P$GAMYB_01 		0.791 0.806
GAM1_ORYSI
M11055_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GAMYB_Q2 		0.774 0.796
MYB33
M02306_2.00 		Arabidopsis thaliana
HAACNRHHNN
NNDDYNGTTD		 PBM
Weirauch et al.(2014)
pTH8204 		0.725 0.763
MYB33
M07120_2.00 		Arabidopsis thaliana
NTAACYGWHWH
DWDWCRGTTAN		 Dap-seq
OMalley et al.(2016)
MYB33_col_a 		0.725 0.763
ATMYB65
M01076_2.00 		Arabidopsis thaliana
HAACNRHHN
NDDYNGTTD		 PBM
Sullivan et al.(2014)
pTH7084 		0.711 0.774
ATMYB65
M07076_2.00 		Arabidopsis thaliana
DHHNTAACBGHMW
WKDCVGTTANDDH		 Dap-seq
OMalley et al.(2016)
MYB65_col200_a 		0.711 0.774
ATMYB65
M07077_2.00 		Arabidopsis thaliana
NTAACYGHMWHNDHN
NDHNDWKDCRGTTAN		 Dap-seq
OMalley et al.(2016)
MYB65_colamp_a 		0.711 0.774
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra022888.1-P Myb 19 66
Bra022888.1-P Myb 72 117

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

237 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL58 Arabidopsis thaliana AT1G28450 N
AGL59 Arabidopsis thaliana AT1G28460 N
AGL64 Arabidopsis thaliana AT1G29962 N
AGL85 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1002660 N
Bo5g061120 Brassica oleracea Bo5g061120 N
Bostr.15697s0292 Boechera stricta Bostr.15697s0292 N
Cagra.12398s0004 Capsella grandiflora Cagra.12398s0004 N
Cagra.18025s0001 Capsella grandiflora Cagra.18025s0001 N
Cagra.5647s0017 Capsella grandiflora Cagra.5647s0017 N
Carubv10002683m.g Capsella rubella Carubv10002683m.g N
Carubv10002712m.g Capsella rubella Carubv10002712m.g N
Carubv10002787m.g Capsella rubella Carubv10002787m.g N
Carubv10010430m.g Capsella rubella Carubv10010430m.g N
Carubv10010438m.g Capsella rubella Carubv10010438m.g N
Carubv10010833m.g Capsella rubella Carubv10010833m.g N
Carubv10012214m.g Capsella rubella Carubv10012214m.g N
Carubv10012479m.g Capsella rubella Carubv10012479m.g N
Carubv10021425m.g Capsella rubella Carubv10021425m.g N
Carubv10021446m.g Capsella rubella Carubv10021446m.g N
Carubv10021725m.g Capsella rubella Carubv10021725m.g N
Carubv10021838m.g Capsella rubella Carubv10021838m.g N
Carubv10022052m.g Capsella rubella Carubv10022052m.g N
Carubv10022123m.g Capsella rubella Carubv10022123m.g N
Carubv10022431m.g Capsella rubella Carubv10022431m.g N
Thhalv10009431m.g Eutrema salsugineum Thhalv10009431m.g N