ONIVA05G20060 (Oryza nivara)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 ONIVA05G20060 T276303_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3R5
M07116_2.00 		Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN		 Dap-seq
OMalley et al.(2016)
MYB3R5_col_a 		0.707 0.814
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.686 0.779
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.680 0.750
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.680 0.750
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.676 0.771
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ONIVA05G20060.1 Myb 55 101
ONIVA05G20060.1 Myb 107 153
ONIVA05G20060.1 Myb 159 204

Links

Other Myb/SANT family TFs
Other Oryza nivara TFs

120 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29794.m003447 Ricinus communis 29794.m003447 I 0.669
30055.m001588 Ricinus communis 30055.m001588 N
AMTR_s00012p00208260 Amborella trichopoda AMTR_s00012p00208260 I 0.669
anac090 Arabidopsis lyrata fgenesh2_kg.6__2228__AT5G22380.1 N
Aquca_005_00168 Aquilegia coerulea Aquca_005_00168 N
BGIOSGA004848 Oryza indica BGIOSGA004848 N
BGIOSGA037019 Oryza indica BGIOSGA037019 N
Bo2g023870 Brassica oleracea Bo2g023870 N
Bo3g016870 Brassica oleracea Bo3g016870 N
Bo3g171130 Brassica oleracea Bo3g171130 I 0.669
Bo7g115810 Brassica oleracea Bo7g115810 I 0.674
Bo9g148540 Brassica oleracea Bo9g148540 N
Bostr.22252s0130 Boechera stricta Bostr.22252s0130 I 0.676
Bostr.26527s0039 Boechera stricta Bostr.26527s0039 N
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.680
Bra002408 Brassica rapa Bra002408 N
Bra009597 Brassica rapa Bra009597 I 0.666
Bra020188 Brassica rapa Bra020188 N
Bra034531 Brassica rapa Bra034531 I 0.669
BRADI2G54640 Brachypodium distachyon BRADI2G54640 I 0.685
BRADI2G55780 Brachypodium distachyon BRADI2G55780 N
Cagra.0487s0012 Capsella grandiflora Cagra.0487s0012 I 0.693
Cagra.0846s0014 Capsella grandiflora Cagra.0846s0014 N
Cagra.2515s0028 Capsella grandiflora Cagra.2515s0028 I 0.674
Carubv10000643m.g Capsella rubella Carubv10000643m.g I 0.693
Carubv10001788m.g Capsella rubella Carubv10001788m.g N
Carubv10013377m.g Capsella rubella Carubv10013377m.g I 0.674
cassava12645.valid.m1 Manihot esculenta cassava12645.valid.m1 I 0.681
cassava14235.m1 Manihot esculenta cassava14235.m1 N
cassava32867.m1 Manihot esculenta cassava32867.m1 N
Ca_14925 Cicer arietinum Ca_14925 I 0.681
chr1.CM0147.520.nd Lotus japonicus chr1.CM0147.520.nd I 0.680
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.668
Cla018691 Citrullus lanatus Cla018691 N
Cla023357 Citrullus lanatus Cla023357 I 0.665
Cucsa.083530 Cucumis sativus Cucsa.083530 N
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.665
Eucgr.A02638 Eucalyptus grandis Eucgr.A02638 N
Eucgr.K03133 Eucalyptus grandis Eucgr.K03133 I 0.688
evm.TU.supercontig_228.17 Carica papaya evm.TU.supercontig_228.17 I 0.688
F775_13455 Aegilops tauschii F775_13455 N
F775_19761 Aegilops tauschii F775_19761 N
fgenesh1_pg.C_scaffold_3000839 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000839 I 0.684
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.671
GLYMA03G19470 Glycine max GLYMA03G19470 I 0.661
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.670
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.670
GLYMA07G15820 Glycine max GLYMA07G15820 I 0.668
GLYMA18G39740 Glycine max GLYMA18G39740 I 0.668
Gorai.001G122800 Gossypium raimondii Gorai.001G122800 N
Gorai.002G238300 Gossypium raimondii Gorai.002G238300 N
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.686
GRMZM2G465835 Zea mays GRMZM2G465835 N
GRMZM5G832473 Zea mays GRMZM5G832473 N
GSMUA_Achr6G19400_001 Musa acuminata GSMUA_Achr6G19400_001 N
GSMUA_Achr7G10520_001 Musa acuminata GSMUA_Achr7G10520_001 I 0.680
GSMUA_Achr8G01410_001 Musa acuminata GSMUA_Achr8G01410_001 N
GSMUA_Achr9G29750_001 Musa acuminata GSMUA_Achr9G29750_001 N
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.666
LPERR01G32790 Leersia perrieri LPERR01G32790 N
LPERR05G14390 Leersia perrieri LPERR05G14390 N
LPERR11G02950 Leersia perrieri LPERR11G02950 N
LPERR12G03220 Leersia perrieri LPERR12G03220 N
Lus10004846.g Linum usitatissimum Lus10004846.g N
Lus10020643.g Linum usitatissimum Lus10020643.g N
Lus10022136.g Linum usitatissimum Lus10022136.g I 0.688
MDP0000219581 Malus domestica MDP0000219581 I 0.684
MLOC_10556 Hordeum vulgare MLOC_10556 I 0.669
MLOC_60153 Hordeum vulgare MLOC_60153 N
MLOC_7757 Hordeum vulgare MLOC_7757 N
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.692
MTR_7g061330 Medicago truncatula MTR_7g061330 I 0.681
MTR_7g461410 Medicago truncatula MTR_7g461410 I 0.681
MYB3R-3 Arabidopsis thaliana AT3G09370 I 0.679
NAC090 Arabidopsis thaliana AT5G22380 N
OB01G18340 Oryza brachyantha OB01G18340 I 0.691
OB01G45570 Oryza brachyantha OB01G45570 I 0.684
OB05G26010 Oryza brachyantha OB05G26010 N
OB12G13350 Oryza brachyantha OB12G13350 N
OBART01G38190 Oryza barthii OBART01G38190 N
OBART12G03440 Oryza barthii OBART12G03440 N
OGLUM01G42380 Oryza glumaepatula OGLUM01G42380 N
OGLUM12G04110 Oryza glumaepatula OGLUM12G04110 N
OMERI01G35090 Oryza meridionalis OMERI01G35090 N
ONIVA01G42870 Oryza nivara ONIVA01G42870 N
ONIVA12G03060 Oryza nivara ONIVA12G03060 N
OPUNC01G36980 Oryza punctata OPUNC01G36980 N
OPUNC05G16010 Oryza punctata OPUNC05G16010 N
OPUNC12G03240 Oryza punctata OPUNC12G03240 N
ORGLA01G0073200 Oryza glaberrima ORGLA01G0073200 I 0.682
ORGLA01G0320200 Oryza glaberrima ORGLA01G0320200 N
ORGLA12G0033100 Oryza glaberrima ORGLA12G0033100 N
ORUFI01G41540 Oryza rufipogon ORUFI01G41540 N
OS01G0862800 Oryza sativa OS01G0862800 N
OS12G0156100 Oryza sativa OS12G0156100 N
Pavir.J02276 Panicum virgatum Pavir.J02276 N
Pavir.J04751 Panicum virgatum Pavir.J04751 N
Pavir.J36282 Panicum virgatum Pavir.J36282 N
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.680
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.680
PGSC0003DMG400008908 Solanum tuberosum PGSC0003DMG400008908 I 0.674
PK12011.1 Cannabis sativa PK12011.1 D 0.686
Pm005124 Prunus mume Pm005124 I 0.673
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.693
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.676
Sb03g040720 Sorghum bicolor Sb03g040720 N
Si002586m.g Setaria italica Si002586m.g N
Si022966m.g Setaria italica Si022966m.g N
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.679
Solyc09g010820.2 Solanum lycopersicum Solyc09g010820.2 I 0.674
TCM_021936 Theobroma cacao TCM_021936 I 0.674
TCM_041364 Theobroma cacao TCM_041364 N
Thhalv10014563m.g Eutrema salsugineum Thhalv10014563m.g N
TRAES3BF019300010CFD_g Triticum aestivum TRAES3BF019300010CFD_g N
Traes_1AL_179FC28F2 Triticum aestivum Traes_1AL_179FC28F2 N
Traes_1AL_51EBF8930 Triticum aestivum Traes_1AL_51EBF8930 N 0.672
Traes_1AL_C76BCC7EC Triticum aestivum Traes_1AL_C76BCC7EC N
Traes_1AS_61D017632 Triticum aestivum Traes_1AS_61D017632 I 0.683
Traes_5DL_43FC1B296 Triticum aestivum Traes_5DL_43FC1B296 N
TRIUR3_34272 Triticum urartu TRIUR3_34272 N