PGSC0003DMG400008908 (Solanum tuberosum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 PGSC0003DMG400008908 T277576_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3R5
M07116_2.00 		Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN		 Dap-seq
OMalley et al.(2016)
MYB3R5_col_a 		0.739 0.843
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400023012 Myb 59 105
PGSC0003DMT400023012 Myb 111 157
PGSC0003DMT400023012 Myb 163 208

Links

Other Myb/SANT family TFs
Other Solanum tuberosum TFs

86 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29846.m000184 Ricinus communis 29846.m000184 I 0.778
AMTR_s00012p00208260 Amborella trichopoda AMTR_s00012p00208260 I 0.671
Aquca_003_00045 Aquilegia coerulea Aquca_003_00045 I 0.780
ATMYB3R5 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000124 I 0.739
BGIOSGA017917 Oryza indica BGIOSGA017917 I 0.674
Bo1g144510 Brassica oleracea Bo1g144510 I 0.747
Bo5g139340 Brassica oleracea Bo5g139340 I 0.705
Bo9g184660 Brassica oleracea Bo9g184660 I 0.700
Bostr.22252s0130 Boechera stricta Bostr.22252s0130 I 0.744
Bostr.6251s0040 Boechera stricta Bostr.6251s0040 I 0.757
Bra009597 Brassica rapa Bra009597 I 0.710
Bra029762 Brassica rapa Bra029762 I 0.710
Bra034067 Brassica rapa Bra034067 I 0.747
BRADI2G54640 Brachypodium distachyon BRADI2G54640 I 0.733
Cagra.0487s0012 Capsella grandiflora Cagra.0487s0012 I 0.777
Cagra.2515s0028 Capsella grandiflora Cagra.2515s0028 I 0.755
Carubv10000643m.g Capsella rubella Carubv10000643m.g I 0.777
Carubv10013377m.g Capsella rubella Carubv10013377m.g I 0.755
cassava12645.valid.m1 Manihot esculenta cassava12645.valid.m1 I 0.745
Ca_14925 Cicer arietinum Ca_14925 I 0.670
Ca_21127 Cicer arietinum Ca_21127 I 0.675
chr1.CM0147.520.nd Lotus japonicus chr1.CM0147.520.nd I 0.771
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.668
Ciclev10011452m.g Citrus clementina Ciclev10011452m.g I 0.789
Cla018173 Citrullus lanatus Cla018173 I 0.727
Cla023357 Citrullus lanatus Cla023357 I 0.665
Cucsa.175460 Cucumis sativus Cucsa.175460 I 0.749
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.665
Eucgr.K03133 Eucalyptus grandis Eucgr.K03133 I 0.765
evm.TU.supercontig_228.17 Carica papaya evm.TU.supercontig_228.17 I 0.751
fgenesh1_pg.C_scaffold_3000839 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000839 I 0.746
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.671
gene18416-v1.0-hybrid Fragaria vesca gene18416-v1.0-hybrid I 0.731
GLYMA03G19470 Glycine max GLYMA03G19470 I 0.702
GLYMA07G15820 Glycine max GLYMA07G15820 I 0.785
GLYMA18G39740 Glycine max GLYMA18G39740 I 0.768
Gorai.001G249400 Gossypium raimondii Gorai.001G249400 I 0.760
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.783
GRMZM2G081919 Zea mays GRMZM2G081919 I 0.732
GSMUA_Achr10G26610_001 Musa acuminata GSMUA_Achr10G26610_001 I 0.748
GSMUA_Achr6G05030_001 Musa acuminata GSMUA_Achr6G05030_001 I 0.746
GSMUA_Achr7G10520_001 Musa acuminata GSMUA_Achr7G10520_001 I 0.730
LPERR01G31650 Leersia perrieri LPERR01G31650 I 0.724
Lus10024394.g Linum usitatissimum Lus10024394.g I 0.757
Lus10025351.g Linum usitatissimum Lus10025351.g I 0.757
MDP0000219581 Malus domestica MDP0000219581 I 0.741
mgf019610m Mimulus guttatus mgf019610m I 0.732
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.692
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.666
MTR_7g061330 Medicago truncatula MTR_7g061330 I 0.765
MTR_7g461410 Medicago truncatula MTR_7g461410 I 0.765
MYB3R-2 Oryza sativa OS01G0841500 I 0.744
MYB3R-3 Arabidopsis thaliana AT3G09370 I 0.740
MYB3R5 Arabidopsis thaliana AT5G02320 D 0.739
OB01G45570 Oryza brachyantha OB01G45570 I 0.694
OBART05G19200 Oryza barthii OBART05G19200 I 0.674
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.744
OLONG_011208 Oryza longistaminata OLONG_011208 I 0.689
ONIVA05G20060 Oryza nivara ONIVA05G20060 I 0.674
OPUNC05G16800 Oryza punctata OPUNC05G16800 I 0.682
orange1.1g009402m.g Citrus sinensis orange1.1g009402m.g I 0.789
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.744
ORUFI05G20390 Oryza rufipogon ORUFI05G20390 I 0.674
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I 0.754
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.743
PDK_20s1314361g001 Phoenix dactylifera PDK_20s1314361g001 N 0.663
PK11664.1 Cannabis sativa PK11664.1 I 0.713
Pm002704 Prunus mume Pm002704 I 0.791
POPTR_0006s08570 Populus trichocarpa POPTR_0006s08570 I 0.783
PRUPE_ppa003208mg Prunus persica PRUPE_ppa003208mg I 0.791
SapurV1A.0001s1810 Salix purpurea SapurV1A.0001s1810 I 0.785
Sb03g039470 Sorghum bicolor Sb03g039470 I 0.737
Si000842m.g Setaria italica Si000842m.g I 0.743
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.675
Solyc09g010820.2 Solanum lycopersicum Solyc09g010820.2 I 0.909
TCM_021936 Theobroma cacao TCM_021936 I 0.771
Thhalv10013211m.g Eutrema salsugineum Thhalv10013211m.g I 0.774
Thhalv10020579m.g Eutrema salsugineum Thhalv10020579m.g I 0.755
TRAES3BF104600030CFD_g Triticum aestivum TRAES3BF104600030CFD_g I 0.742
Traes_1BL_C25B5DDB4 Triticum aestivum Traes_1BL_C25B5DDB4 I 0.702
Traes_1DL_B26A733D4 Triticum aestivum Traes_1DL_B26A733D4 I 0.688
Traes_3AL_386795528 Triticum aestivum Traes_3AL_386795528 I 0.742
Traes_3DL_6BBC889A1 Triticum aestivum Traes_3DL_6BBC889A1 I 0.742
TRIUR3_29290 Triticum urartu TRIUR3_29290 I 0.697
VIT_08s0007g00360 Vitis vinifera VIT_08s0007g00360 I 0.775
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.661