30174.m008805 (Ricinus communis)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 30174.m008805 T323227_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.945 0.760
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.937 0.720
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.928 0.733
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.928 0.733
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.928 0.733
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.908 0.733
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.907 0.720
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.906 0.707
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.906 0.707
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.906 0.707
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.905 0.693
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.899 0.720
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.895 0.693
PRUPE_ppa000682mg
M02478_2.00 		Prunus persica
NNNNGTACGD
HCGTACNNNN		 PBM
Weirauch et al.(2014)
pTH9281 		0.887 0.707
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30174.m008805 SBP 168 242

Links

Other SBP family TFs
Other Ricinus communis TFs

451 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACOC_0000492601 Angiostrongylus costaricensis ACOC_0000492601 I
ANCCEY_07914 Ancylostoma ceylanicum ANCCEY_07914 I
CBG01229 Caenorhabditis briggsae CBG01229 N
CBG01233 Caenorhabditis briggsae CBG01233 N
CBG01234 Caenorhabditis briggsae CBG01234 N
CBG01235 Caenorhabditis briggsae CBG01235 I
CBG01243 Caenorhabditis briggsae CBG01243 I
CBG01246 Caenorhabditis briggsae CBG01246 N
CBG06387 Caenorhabditis briggsae CBG06387 I
CBG09320 Caenorhabditis briggsae CBG09320 I
CBG20727 Caenorhabditis briggsae CBG20727 I
CBG20729 Caenorhabditis briggsae CBG20729 I
CBG27350 Caenorhabditis briggsae CBG27350 I
CBN00299 Caenorhabditis brenneri CBN00299 I
CBN15241 Caenorhabditis brenneri CBN15241 I
CBN18082 Caenorhabditis brenneri CBN18082 I
CBN21486 Caenorhabditis brenneri CBN21486 I
CBN21664 Caenorhabditis brenneri CBN21664 N
CBN23838 Caenorhabditis brenneri CBN23838 I
CBN28290 Caenorhabditis brenneri CBN28290 I
CJA19466 Caenorhabditis japonica CJA19466 I
CJA28065 Caenorhabditis japonica CJA28065 I
CRE08749 Caenorhabditis remanei CRE08749 I
CRE08750 Caenorhabditis remanei CRE08750 N
CRE08751 Caenorhabditis remanei CRE08751 I
CRE08753 Caenorhabditis remanei CRE08753 I
CRE08754 Caenorhabditis remanei CRE08754 I
CRE14845 Caenorhabditis remanei CRE14845 I
CRE15644 Caenorhabditis remanei CRE15644 I
CRE15675 Caenorhabditis remanei CRE15675 I
CRE18698 Caenorhabditis remanei CRE18698 I
CRE31070 Caenorhabditis remanei CRE31070 I
HPBE_0001646201 Heligmosomoides bakeri HPBE_0001646201 I
L596_g14586 Steinernema carpocapsae L596_g14586 I
NBR_0001834701 Nippostrongylus brasiliensis NBR_0001834701 I
NBR_0001834801 Nippostrongylus brasiliensis NBR_0001834801 I
nhr-125 Caenorhabditis elegans WBGene00003715 I
nhr-130 Caenorhabditis elegans WBGene00003720 I
nhr-142 Caenorhabditis elegans WBGene00018430 D
nhr-182 Caenorhabditis elegans WBGene00018265 D
nhr-212 Caenorhabditis elegans WBGene00020153 I
nhr-54 Caenorhabditis elegans WBGene00003644 I
nhr-55 Caenorhabditis elegans WBGene00003645 I
nhr-59 Caenorhabditis elegans WBGene00003649 I
PEQ_0000560101 Parascaris equorum PEQ_0000560101 I
SVUK_0002058501 Strongylus vulgaris SVUK_0002058501 I