Cla013734 (Citrullus lanatus)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Cla013734 T344536_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.943 0.573
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.940 0.564
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.938 0.521
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.938 0.521
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.938 0.521
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.925 0.530
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.894 0.427
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.866 0.385
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.863 0.393
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.861 0.385
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.847 0.385
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.835 0.368
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.835 0.368
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.831 0.350
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla013734 TCP 50 207

Links

Other TCP family TFs
Other Citrullus lanatus TFs

421 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29727.m000472 Ricinus communis 29727.m000472 I
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I
AMTR_s00007p00263040 Amborella trichopoda AMTR_s00007p00263040 N
Aquca_020_00550 Aquilegia coerulea Aquca_020_00550 I
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I
ASIL1 Arabidopsis lyrata fgenesh2_kg.1__4489__AT1G54060.1 I
ASIL2 Arabidopsis thaliana AT3G14180 D
Bo3g065930 Brassica oleracea Bo3g065930 I
Bo6g033010 Brassica oleracea Bo6g033010 I
Bo6g050870 Brassica oleracea Bo6g050870 I
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I
Bra014370 Brassica rapa Bra014370 I
Cagra.0769s0020 Capsella grandiflora Cagra.0769s0020 I
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I
Carubv10009310m.g Capsella rubella Carubv10009310m.g I
Carubv10015321m.g Capsella rubella Carubv10015321m.g I
Carubv10015798m.g Capsella rubella Carubv10015798m.g I
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I
cassava34877.m1 Manihot esculenta cassava34877.m1 I
cassava47424.m1 Manihot esculenta cassava47424.m1 I
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I
Cla015773 Citrullus lanatus Cla015773 I
Cucsa.359990 Cucumis sativus Cucsa.359990 I
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N
GLYMA07G04790 Glycine max GLYMA07G04790 I
GLYMA16G01370 Glycine max GLYMA16G01370 I
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I
MDP0000097759 Malus domestica MDP0000097759 N
MDP0000255104 Malus domestica MDP0000255104 I
MDP0000281471 Malus domestica MDP0000281471 I
MDP0000943251 Malus domestica MDP0000943251 N
mgf000047m Mimulus guttatus mgf000047m I
mgf006505m Mimulus guttatus mgf006505m I
MTR_8g022290 Medicago truncatula MTR_8g022290 I
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I
PGSC0003DMG400037972 Solanum tuberosum PGSC0003DMG400037972 I
PK22475.1 Cannabis sativa PK22475.1 N
Pm013209 Prunus mume Pm013209 I
POPTR_0001s06330 Populus trichocarpa POPTR_0001s06330 N
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I
SapurV1A.0504s0110 Salix purpurea SapurV1A.0504s0110 N
SapurV1A.2810s0010 Salix purpurea SapurV1A.2810s0010 N
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I
TCM_042467 Theobroma cacao TCM_042467 N
Thhalv10011582m.g Eutrema salsugineum Thhalv10011582m.g I
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I
VIT_09s0002g00720 Vitis vinifera VIT_09s0002g00720 N