CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10001528m.g
(
Eutrema salsugineum
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03634 (TCP)
IPR005333
Thhalv10001528m.g
T345075_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TCP9
M01086_2.00
Arabidopsis thaliana
NNGGGCCCACN
NGTGGGCCCNN
PBM
Sullivan et al.(2014)
pTH9796
0.982
0.919
TCP9
M07281_2.00
Arabidopsis thaliana
RTGGGDCCCAC
GTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a
0.982
0.919
TCP9
M07282_2.00
Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN
NVNHNHNHHGTGGGYCCCACH
Dap-seq
OMalley et al.(2016)
At2g45680_col_b
0.982
0.919
VIT_15s0048g01150
M02515_2.00
Vitis vinifera
NNGGNCCCAC
GTGGGNCCNN
PBM
Weirauch et al.(2014)
pTH9294
0.976
0.797
PK14653.1
M01317_2.00
Cannabis sativa
BGGSCCCAC
GTGGGSCCV
PBM
Lambert et al.(2019)
pTH11324
0.970
0.626
PK14653.1
M02517_2.00
Cannabis sativa
BTGGGCCCAV
BTGGGCCCAV
PBM
Weirauch et al.(2014)
pTH9586
0.970
0.626
LjSGA_053525.1
M02518_2.00
Lotus japonicus
GGNCCCAC
GTGGGNCC
PBM
Weirauch et al.(2014)
pTH9201
0.968
0.626
PCF2
M11399_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF2_01
0.960
0.528
TCP19
M02504_2.00
Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN
PBM
Weirauch et al.(2014)
pTH7452
0.958
0.569
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00
Arabidopsis lyrata
GRSCCCAC
GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9232
0.958
0.569
TCP15
M00892_2.00
Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP15
0.958
0.504
TCP15
M07277_2.00
Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_col_a
0.958
0.504
TCP15
M07278_2.00
Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a
0.958
0.504
TCP15
M11394_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP15_01
0.958
0.504
PK13314.1
M01316_2.00
Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN
PBM
Lambert et al.(2019)
pTH11330
0.957
0.488
TCP14
M07289_2.00
Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT
Dap-seq
OMalley et al.(2016)
TCP14_col_b
0.957
0.496
GLYMA19G26560
M02511_2.00
Glycine max
BGGBCCCAC
GTGGGVCCV
PBM
Weirauch et al.(2014)
pTH9184
0.956
0.488
TCP20
M02502_2.00
Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC
PBM
Weirauch et al.(2014)
pTH8159
0.956
0.463
AT-TCP20
M02507_2.00
Arabidopsis lyrata
GRSCCCAC
GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9229
0.956
0.463
TCP20
M07285_2.00
Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN
Dap-seq
OMalley et al.(2016)
TCP20_col_a
0.956
0.463
TCP20
M07286_2.00
Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
TCP20_colamp_a
0.956
0.463
TCP20
M11397_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP20_01
0.956
0.463
PK12736.1
M01315_2.00
Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN
PBM
Lambert et al.(2019)
pTH10121
0.954
0.512
TCP8
M01311_2.00
Arabidopsis thaliana
NGGNMCCAC
GTGGKNCCN
PBM
Lambert et al.(2019)
pTH11569
0.952
0.480
cassava45561.m1
M02516_2.00
Manihot esculenta
KGGVCCCACH
DGTGGGBCCM
PBM
Weirauch et al.(2014)
pTH9207
0.949
0.463
TCP23
M00891_2.00
Arabidopsis thaliana
NNGGKCCCAC
GTGGGMCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP23
0.944
0.504
TCP22
M07279_2.00
Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a
0.939
0.463
TCP22
M07280_2.00
Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At1g72010_col
0.939
0.463
TCP21
M07292_2.00
Arabidopsis thaliana
NNRTGGGDCCCACN
NGTGGGHCCCAYNN
Dap-seq
OMalley et al.(2016)
At5g08330_col_a
0.933
0.463
TCP21
M07293_2.00
Arabidopsis thaliana
RTRGGDCCCACH
DGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a
0.933
0.463
OS02G0635800
M02512_2.00
Oryza sativa
NBGGGCCCVN
NBGGGCCCVN
PBM
Weirauch et al.(2014)
pTH8856
0.929
0.423
OsI_08196
M02513_2.00
Oryza sativa
GGGCCCAC
GTGGGCCC
PBM
Weirauch et al.(2014)
pTH9274
0.929
0.423
TCP7
M07294_2.00
Arabidopsis thaliana
RTGGGNCCCAC
GTGGGNCCCAY
Dap-seq
OMalley et al.(2016)
TCP7_col_a
0.928
0.439
TCP11
M11395_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_01
0.889
0.406
TCP11
M11396_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_02
0.889
0.406
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10001528m
TCP
76
198
ASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMSVNGTLKIPTTTNTDSDLGENPAKKRRKRPSNSEYIDINDAVSVCSGLAPISTAT
Links
Other
TCP
family TFs
Other
Eutrema salsugineum
TFs
650 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29983.m003131
Ricinus communis
29983.m003131
I
30054.m000786
Ricinus communis
30054.m000786
I
AMTR_s00058p00133630
Amborella trichopoda
AMTR_s00058p00133630
I
AMTR_s00149p00035260
Amborella trichopoda
AMTR_s00149p00035260
I
APRR2
Arabidopsis thaliana
AT4G18020
D
APRR2
Arabidopsis lyrata
fgenesh2_kg.7__2503__AT4G18020.2
I
APRR2
Vitis vinifera
VIT_02s0012g00570
I
Aquca_044_00072
Aquilegia coerulea
Aquca_044_00072
I
Bo1g019180
Brassica oleracea
Bo1g019180
I
Bo7g067200
Brassica oleracea
Bo7g067200
I
Bo7g105690
Brassica oleracea
Bo7g105690
I
Bostr.30275s0270
Boechera stricta
Bostr.30275s0270
I
Bostr.3148s0040
Boechera stricta
Bostr.3148s0040
I
Bostr.7903s0106
Boechera stricta
Bostr.7903s0106
I
Bra012623
Brassica rapa
Bra012623
I
Bra013277
Brassica rapa
Bra013277
I
Bra013278
Brassica rapa
Bra013278
I
Bra013279
Brassica rapa
Bra013279
I
Bra033726
Brassica rapa
Bra033726
I
Cagra.0381s0008
Capsella grandiflora
Cagra.0381s0008
I
Cagra.1595s0002
Capsella grandiflora
Cagra.1595s0002
I
Cagra.2516s0014
Capsella grandiflora
Cagra.2516s0014
I
Carubv10004540m.g
Capsella rubella
Carubv10004540m.g
I
Carubv10014114m.g
Capsella rubella
Carubv10014114m.g
I
Carubv10026528m.g
Capsella rubella
Carubv10026528m.g
I
cassava2466.valid.m1
Manihot esculenta
cassava2466.valid.m1
I
cassava42047.valid.m1
Manihot esculenta
cassava42047.valid.m1
I
cassava42048.valid.m1
Manihot esculenta
cassava42048.valid.m1
I
cassava43649.valid.m1
Manihot esculenta
cassava43649.valid.m1
I
cassava43650.valid.m1
Manihot esculenta
cassava43650.valid.m1
I
cassava9823.m1
Manihot esculenta
cassava9823.m1
I
Ca_02285
Cicer arietinum
Ca_02285
I
Ca_12825
Cicer arietinum
Ca_12825
I
Ca_24009
Cicer arietinum
Ca_24009
I
chr2.CM0021.770.nc
Lotus japonicus
chr2.CM0021.770.nc
I
chr4.CM0831.100.nd
Lotus japonicus
chr4.CM0831.100.nd
I
Ciclev10015266m.g
Citrus clementina
Ciclev10015266m.g
I
Ciclev10031120m.g
Citrus clementina
Ciclev10031120m.g
I
Cla003791
Citrullus lanatus
Cla003791
I
Cla008926
Citrullus lanatus
Cla008926
I
Cla016403
Citrullus lanatus
Cla016403
I
Cucsa.087530
Cucumis sativus
Cucsa.087530
I
Cucsa.313480
Cucumis sativus
Cucsa.313480
I
Cucsa.321580
Cucumis sativus
Cucsa.321580
I
estExt_gwp_gw1.C_310256
Physcomitrella patens
estExt_gwp_gw1.C_310256
I
Eucgr.E00308
Eucalyptus grandis
Eucgr.E00308
I
Eucgr.K01056
Eucalyptus grandis
Eucgr.K01056
I
evm.TU.supercontig_6.428
Carica papaya
evm.TU.supercontig_6.428
I
fgenesh1_pm.scaffold_311000005
Physcomitrella patens
fgenesh1_pm.scaffold_311000005
I
fgenesh2_kg.8__391__AT5G44190.1
Arabidopsis lyrata
fgenesh2_kg.8__391__AT5G44190.1
I
gene10484-v1.0-hybrid
Fragaria vesca
gene10484-v1.0-hybrid
I
gene17750-v1.0-hybrid
Fragaria vesca
gene17750-v1.0-hybrid
I
GLK2
Arabidopsis thaliana
AT5G44190
I
GLYMA01G40900
Glycine max
GLYMA01G40900
I
GLYMA05G06070
Glycine max
GLYMA05G06070
I
GLYMA11G04441
Glycine max
GLYMA11G04441
I
GLYMA17G16360
Glycine max
GLYMA17G16360
I
Gorai.002G020300
Gossypium raimondii
Gorai.002G020300
I
Gorai.003G180100
Gossypium raimondii
Gorai.003G180100
I
Gorai.004G188300
Gossypium raimondii
Gorai.004G188300
I
Gorai.008G228800
Gossypium raimondii
Gorai.008G228800
I
Gorai.012G126600
Gossypium raimondii
Gorai.012G126600
I
GPRI1
Arabidopsis thaliana
AT2G20570
D
GPRI1
Arabidopsis lyrata
fgenesh2_kg.3__3588__AT2G20570.1
I
GSMUA_Achr11G17740_001
Musa acuminata
GSMUA_Achr11G17740_001
I
GSMUA_Achr2G18200_001
Musa acuminata
GSMUA_Achr2G18200_001
I
Lus10003013.g
Linum usitatissimum
Lus10003013.g
I
Lus10011044.g
Linum usitatissimum
Lus10011044.g
I
Lus10018649.g
Linum usitatissimum
Lus10018649.g
I
Lus10030938.g
Linum usitatissimum
Lus10030938.g
I
Lus10033642.g
Linum usitatissimum
Lus10033642.g
I
Lus10039883.g
Linum usitatissimum
Lus10039883.g
I
Lus10040109.g
Linum usitatissimum
Lus10040109.g
I
MDP0000225179
Malus domestica
MDP0000225179
I
MDP0000237396
Malus domestica
MDP0000237396
I
MDP0000248863
Malus domestica
MDP0000248863
I
MDP0000526864
Malus domestica
MDP0000526864
I
MTR_4g098870
Medicago truncatula
MTR_4g098870
I
MTR_5g014040
Medicago truncatula
MTR_5g014040
I
orange1.1g008254m.g
Citrus sinensis
orange1.1g008254m.g
I
orange1.1g013528m.g
Citrus sinensis
orange1.1g013528m.g
I
PDK_20s1585631g001
Phoenix dactylifera
PDK_20s1585631g001
I
PGSC0003DMG400024217
Solanum tuberosum
PGSC0003DMG400024217
I
PGSC0003DMG400026587
Solanum tuberosum
PGSC0003DMG400026587
I
PK19826.1
Cannabis sativa
PK19826.1
I
PK27491.1
Cannabis sativa
PK27491.1
I
Pm014123
Prunus mume
Pm014123
I
Pm014733
Prunus mume
Pm014733
I
POPTR_0001s02910
Populus trichocarpa
POPTR_0001s02910
I
POPTR_0003s08600
Populus trichocarpa
POPTR_0003s08600
I
POPTR_0007s01230
Populus trichocarpa
POPTR_0007s01230
I
POPTR_0017s04720
Populus trichocarpa
POPTR_0017s04720
I
PRUPE_ppa004161mg
Prunus persica
PRUPE_ppa004161mg
I
PRUPE_ppa014599mg
Prunus persica
PRUPE_ppa014599mg
I
SapurV1A.0118s0260
Salix purpurea
SapurV1A.0118s0260
I
SapurV1A.0132s0010
Salix purpurea
SapurV1A.0132s0010
I
SapurV1A.0693s0070
Salix purpurea
SapurV1A.0693s0070
I
SapurV1A.1296s0050
Salix purpurea
SapurV1A.1296s0050
I
SapurV1A.1950s0030
Salix purpurea
SapurV1A.1950s0030
I
SELMODRAFT_428906
Selaginella moellendorffii
SELMODRAFT_428906
I
Solyc06g061030.2
Solanum lycopersicum
Solyc06g061030.2
I
Solyc08g077230.2
Solanum lycopersicum
Solyc08g077230.2
I
TCM_008193
Theobroma cacao
TCM_008193
I
TCM_015780
Theobroma cacao
TCM_015780
I
Thhalv10001986m.g
Eutrema salsugineum
Thhalv10001986m.g
I
Thhalv10003223m.g
Eutrema salsugineum
Thhalv10003223m.g
I
Thhalv10024919m.g
Eutrema salsugineum
Thhalv10024919m.g
I