Pavir.Ca01725 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ca01725 T009391_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q1ESI9_MAIZE
M09714_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB2A_02 		0.834 0.960
Q84ND8_HORVU
M09719_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DRF11_01 		0.726 0.900
Q84JE9_HORVU
M09718_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DRF13_01 		0.726 0.900
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.712 0.840
Q8H769_WHEAT
M09721_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1_01 		0.699 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ca01725.1.p AP2 83 134
Pavir.Ca01725.2.p AP2 12 63
Pavir.Ca01725.3.p AP2 12 63
Pavir.Ca01725.4.p AP2 82 133

Links

Other AP2 family TFs
Other Panicum virgatum TFs

105 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_01779 Aegilops tauschii F775_01779 I 0.683
F775_02345 Aegilops tauschii F775_02345 I 0.697
F775_05774 Aegilops tauschii F775_05774 I 0.699
F775_32062 Aegilops tauschii F775_32062 I 0.831
Aquca_013_00679 Aquilegia coerulea Aquca_013_00679 I 0.708
Aquca_030_00214 Aquilegia coerulea Aquca_030_00214 I 0.746
Bostr.23794s0027 Boechera stricta Bostr.23794s0027 I 0.696
BRADI2G04000 Brachypodium distachyon BRADI2G04000 I 0.687
BRADI2G29960 Brachypodium distachyon BRADI2G29960 I 0.718
BRADI3G12680 Brachypodium distachyon BRADI3G12680 I 0.690
Bo1g141310 Brassica oleracea Bo1g141310 I 0.691
Bo3g063910 Brassica oleracea Bo3g063910 I 0.679
Bra001386 Brassica rapa Bra001386 I 0.679
Bra034159 Brassica rapa Bra034159 I 0.681
PK07402.1 Cannabis sativa PK07402.1 D 0.712
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.694
Cla001755 Citrullus lanatus Cla001755 I 0.710
Cla006713 Citrullus lanatus Cla006713 I 0.693
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I 0.686
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I 0.686
Cucsa.119440 Cucumis sativus Cucsa.119440 I 0.710
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.695
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I 0.684
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.689
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I 0.739
GLYMA06G45680 Glycine max GLYMA06G45680 I 0.681
GLYMA12G32400 Glycine max GLYMA12G32400 I 0.680
GLYMA13G38030 Glycine max GLYMA13G38030 I 0.680
MLOC_12223 Hordeum vulgare MLOC_12223 I 0.695
MLOC_66580 Hordeum vulgare MLOC_66580 I 0.697
MLOC_66686 Hordeum vulgare MLOC_66686 I 0.699
MLOC_77405 Hordeum vulgare MLOC_77405 I 0.726
Q84JE9_HORVU Hordeum vulgare Q84JE9_HORVU D 0.726
Q84ND8_HORVU Hordeum vulgare Q84ND8_HORVU D 0.726
LPERR01G03760 Leersia perrieri LPERR01G03760 I 0.688
LPERR05G09930 Leersia perrieri LPERR05G09930 I 0.703
LPERR08G12790 Leersia perrieri LPERR08G12790 I 0.687
LPERR08G20650 Leersia perrieri LPERR08G20650 I 0.682
Lus10010632.g Linum usitatissimum Lus10010632.g I 0.677
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.678
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.678
MDP0000147009 Malus domestica MDP0000147009 I 0.737
MDP0000165880 Malus domestica MDP0000165880 I 0.742
MDP0000446783 Malus domestica MDP0000446783 I 0.737
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.698
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.686
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.692
GSMUA_Achr5G28050_001 Musa acuminata GSMUA_Achr5G28050_001 I 0.679
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.691
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.705
OBART01G04210 Oryza barthii OBART01G04210 I 0.685
OB01G13930 Oryza brachyantha OB01G13930 I 0.685
OB05G20700 Oryza brachyantha OB05G20700 I 0.696
OB08G30790 Oryza brachyantha OB08G30790 I 0.696
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I 0.685
ORGLA08G0193700 Oryza glaberrima ORGLA08G0193700 I 0.696
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I 0.685
OGLUM08G25470 Oryza glumaepatula OGLUM08G25470 I 0.696
BGIOSGA002846 Oryza indica BGIOSGA002846 I 0.685
BGIOSGA026461 Oryza indica BGIOSGA026461 I 0.696
BGIOSGA026464 Oryza indica BGIOSGA026464 I 0.696
OLONG_014228 Oryza longistaminata OLONG_014228 I 0.685
OMERI01G04110 Oryza meridionalis OMERI01G04110 I 0.685
OMERI08G18820 Oryza meridionalis OMERI08G18820 I 0.696
ONIVA01G04630 Oryza nivara ONIVA01G04630 I 0.685
ONIVA09G01190 Oryza nivara ONIVA09G01190 I 0.696
OPUNC01G03970 Oryza punctata OPUNC01G03970 I 0.685
OPUNC08G21890 Oryza punctata OPUNC08G21890 I 0.696
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I 0.685
ORUFI08G26490 Oryza rufipogon ORUFI08G26490 I 0.696
DREB2A Oryza sativa OS01G0165000 I 0.685
DREB2C Oryza sativa OS08G0565200 I 0.696
Pavir.Cb01298 Panicum virgatum Pavir.Cb01298 I 0.848
Pavir.J22169 Panicum virgatum Pavir.J22169 I 0.697
Pavir.J25464 Panicum virgatum Pavir.J25464 I 0.697
Pavir.J37967 Panicum virgatum Pavir.J37967 I 0.678
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.686
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.688
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.698
Pm018989 Prunus mume Pm018989 I 0.737
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I 0.737
PRUPE_ppa022996mg Prunus persica PRUPE_ppa022996mg I 0.724
29729.m002292 Ricinus communis 29729.m002292 I 0.688
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.683
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.712
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.683
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.712
Si022619m.g Setaria italica Si022619m.g I 0.818
Si024059m.g Setaria italica Si024059m.g I 0.697
Sb09g016150 Sorghum bicolor Sb09g016150 I 0.845
TCM_026121 Theobroma cacao TCM_026121 I 0.702
Q8H769_WHEAT Triticum aestivum Q8H769_WHEAT D 0.699
Traes_1AL_A9FB6BF52 Triticum aestivum Traes_1AL_A9FB6BF52 I 0.831
Traes_1BL_BDF0801D01 Triticum aestivum Traes_1BL_BDF0801D01 I 0.831
Traes_2AL_3FB37A3E7 Triticum aestivum Traes_2AL_3FB37A3E7 I 0.685
Traes_2BL_B397F2CE3 Triticum aestivum Traes_2BL_B397F2CE3 I 0.700
Traes_2DL_B32203C91 Triticum aestivum Traes_2DL_B32203C91 I 0.697
Traes_3AS_62742A0471 Triticum aestivum Traes_3AS_62742A0471 I 0.699
TRAES3BF064700080CFD_g Triticum aestivum TRAES3BF064700080CFD_g I 0.699
TRIUR3_17409 Triticum urartu TRIUR3_17409 I 0.831
TRIUR3_17973 Triticum urartu TRIUR3_17973 I 0.699
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.722
GRMZM2G006745 Zea mays GRMZM2G006745 I 0.834
Q1ESI9_MAIZE Zea mays Q1ESI9_MAIZE D 0.834