chr6.LjT13N05.60.nc (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 chr6.LjT13N05.60.nc T010214_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK24580.1
M01101_2.00 		Cannabis sativa
VGCCGGCM
KGCCGGCB		 PBM
Lambert et al.(2019)
pTH11280 		0.747 0.878
ERF118
M01047_2.00 		Arabidopsis thaliana
NCGCCGYNN
NNRCGGCGN		 PBM
Sullivan et al.(2014)
pTH7330 		0.715 0.673
ERF118
M06591_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
CRF10_col100_a 		0.715 0.673
ERF118
M06592_2.00 		Arabidopsis thaliana
NGDATCHNDGATTCNNH
DNNGAATCHNDGATHCN		 Dap-seq
OMalley et al.(2016)
CRF10_colamp_a 		0.715 0.673
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr6.LjT13N05.60.nc AP2 107 158

Links

Other AP2 family TFs
Other Lotus japonicus TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF118 Arabidopsis thaliana AT1G68550 D 0.715
Bostr.13158s0163 Boechera stricta Bostr.13158s0163 I 0.682
PK24580.1 Cannabis sativa PK24580.1 D 0.747
Cagra.0483s0087 Capsella grandiflora Cagra.0483s0087 I 0.692
Carubv10017705m.g Capsella rubella Carubv10017705m.g I 0.692
Ca_06446 Cicer arietinum Ca_06446 I 0.679
Ca_05485 Cicer arietinum Ca_05485 I 0.753
Cla000729 Citrullus lanatus Cla000729 I 0.698
Cla008128 Citrullus lanatus Cla008128 I 0.784
Cla018787 Citrullus lanatus Cla018787 N 0.681
Cla021763 Citrullus lanatus Cla021763 I 0.721
Cucsa.256230 Cucumis sativus Cucsa.256230 I 0.717
Cucsa.365320 Cucumis sativus Cucsa.365320 I 0.784
Cucsa.121430 Cucumis sativus Cucsa.121430 N 0.698
Eucgr.G02326 Eucalyptus grandis Eucgr.G02326 I 0.730
Thhalv10023946m.g Eutrema salsugineum Thhalv10023946m.g I 0.677
gene03751-v1.0-hybrid Fragaria vesca gene03751-v1.0-hybrid I 0.690
gene25185-v1.0-hybrid Fragaria vesca gene25185-v1.0-hybrid I 0.710
GLYMA20G24920 Glycine max GLYMA20G24920 I 0.720
GLYMA10G42130 Glycine max GLYMA10G42130 I 0.762
GLYMA08G30716 Glycine max GLYMA08G30716 I 0.724
GLYMA08G15830 Glycine max GLYMA08G15830 I 0.702
GLYMA01G20383 Glycine max GLYMA01G20383 I 0.733
Gorai.008G183300 Gossypium raimondii Gorai.008G183300 I 0.677
LjSGA_132504.1 Lotus japonicus LjSGA_132504.1 I 0.817
chr2.CM0903.260.nd Lotus japonicus chr2.CM0903.260.nd I 0.744
LjSGA_016572.1 Lotus japonicus LjSGA_016572.1 I 0.817
MDP0000759299 Malus domestica MDP0000759299 I 0.718
MDP0000743350 Malus domestica MDP0000743350 I 0.729
MDP0000166779 Malus domestica MDP0000166779 N 0.693
MDP0000119956 Malus domestica MDP0000119956 I 0.729
cassava43300.valid.m1 Manihot esculenta cassava43300.valid.m1 I 0.684
cassava35758.valid.m1 Manihot esculenta cassava35758.valid.m1 I 0.692
cassava35757.valid.m1 Manihot esculenta cassava35757.valid.m1 I 0.692
mgf006610m Mimulus guttatus mgf006610m I 0.701
POPTR_0008s11900 Populus trichocarpa POPTR_0008s11900 I 0.679
Pm029052 Prunus mume Pm029052 I 0.704
PRUPE_ppa008514mg Prunus persica PRUPE_ppa008514mg I 0.688
27524.m000298 Ricinus communis 27524.m000298 I 0.684
SapurV1A.0079s0190 Salix purpurea SapurV1A.0079s0190 I 0.679
Solyc05g009450.1 Solanum lycopersicum Solyc05g009450.1 I 0.715
Solyc04g007180.1 Solanum lycopersicum Solyc04g007180.1 I 0.751
PGSC0003DMG400015880 Solanum tuberosum PGSC0003DMG400015880 I 0.751
PGSC0003DMG400014541 Solanum tuberosum PGSC0003DMG400014541 I 0.698
TCM_011811 Theobroma cacao TCM_011811 I 0.677
VIT_01s0011g03470 Vitis vinifera VIT_01s0011g03470 I 0.790