neurod1 (Tetraodon nigroviridis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSTNIG00000003533 T037709_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NEUROD1
M04148_2.00 		Homo sapiens
RMCATATGKYVNNNTAWTT
AAWTANNNBRMCATATGKY		 SELEX
Yin et al.(2017)
NEUROD1_FL_HT-SELEX 		0.894 0.942
NEUROD1
M08057_2.00 		Homo sapiens
NNVCAGATGGNNN
NNNCCATCTGBNN		 ChIP-seq
Mathelier et al.(2014)
MA1109.1 		0.894 0.942
NEUROD1
M08735_2.00 		Homo sapiens
RVCAGATGGY
RCCATCTGBY		 Misc
Kulakovskiy et al.(2013)
NDF1_HUMAN.H11MO.0.A 		0.894 0.942
Neurod1
M08764_2.00 		Mus musculus
RVCAGATGGY
RCCATCTGBY		 Misc
Kulakovskiy et al.(2013)
NDF1_MOUSE.H11MO.0.A 		0.894 0.942
Neurod1
M09474_2.00 		Mus musculus
RVCAGATGGY
RCCATCTGBY		 Misc
Heinz et al.(2010)
Islet-NeuroD1_GSE30298 		0.894 0.942
NEUROD1
M09873_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NEUROD_01 		0.894 0.942
NEUROD1
M09874_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NEUROD_02 		0.894 0.942
NEUROD1
M04149_2.00 		Homo sapiens
RVCATATGBYVYNBTAWTW
WAWTAVNRBRVCATATGBY		 SELEX
Yin et al.(2017)
NEUROD1_FL_Methyl-HT-SELEX 		0.894 0.942
NEUROD2
M02795_2.00 		Homo sapiens
RVCATATGKY
RMCATATGBY		 SELEX
Jolma et al.(2013)
NEUROD2_1 		0.859 0.904
NEUROD2
M04160_2.00 		Homo sapiens
RVCATATGKY
RMCATATGBY		 SELEX
Yin et al.(2017)
NEUROD2_FL_HT-SELEX 		0.859 0.904
NEUROD2
M08737_2.00 		Homo sapiens
RRCAGMTGG
CCAKCTGYY		 Misc
Kulakovskiy et al.(2013)
NDF2_HUMAN.H11MO.0.B 		0.859 0.904
Neurod2
M08770_2.00 		Mus musculus
RVCAGATGGB
VCCATCTGBY		 Misc
Kulakovskiy et al.(2013)
NDF2_MOUSE.H11MO.0.A 		0.859 0.904
NEUROD2
M04161_2.00 		Homo sapiens
RMCATATGBY
RVCATATGKY		 SELEX
Yin et al.(2017)
NEUROD2_FL_Methyl-HT-SELEX 		0.859 0.904
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000006121 bHLH 51 103

Links

Other bHLH family TFs
Other Tetraodon nigroviridis TFs

270 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RGL1 Arabidopsis lyrata fgenesh2_kg.2__868__AT1G66350.1 N 0.000
RGL2 Arabidopsis lyrata fgenesh2_kg.3__292__AT3G03450.1 I 0.000
RGL1 Arabidopsis thaliana AT1G66350 N 0.000
Bostr.26959s0284 Boechera stricta Bostr.26959s0284 N 0.000
Bo2g052880 Brassica oleracea Bo2g052880 N 0.000
Bra039762 Brassica rapa Bra039762 N 0.000
Cagra.0463s0002 Capsella grandiflora Cagra.0463s0002 N 0.000
evm.TU.supercontig_116.43 Carica papaya evm.TU.supercontig_116.43 I 0.000
Ca_13295 Cicer arietinum Ca_13295 I 0.000
Ciclev10011367m.g Citrus clementina Ciclev10011367m.g N 0.000
orange1.1g008153m.g Citrus sinensis orange1.1g008153m.g N 0.000
Eucgr.J01594 Eucalyptus grandis Eucgr.J01594 I 0.000
Thhalv10018436m.g Eutrema salsugineum Thhalv10018436m.g N 0.000
GLYMA18G04500 Glycine max GLYMA18G04500 I 0.000
GLYMA11G33720 Glycine max GLYMA11G33720 I 0.000
Gorai.001G089400 Gossypium raimondii Gorai.001G089400 I 0.000
Lus10017626.g Linum usitatissimum Lus10017626.g N 0.000
MDP0000669451 Malus domestica MDP0000669451 I 0.000
cassava6237.valid.m1 Manihot esculenta cassava6237.valid.m1 I 0.000
POPTR_0005s14540 Populus trichocarpa POPTR_0005s14540 I 0.000
POPTR_0004s08890 Populus trichocarpa POPTR_0004s08890 I 0.000
Pm014329 Prunus mume Pm014329 I 0.000
PRUPE_ppa003206mg Prunus persica PRUPE_ppa003206mg I 0.000
28677.m000055 Ricinus communis 28677.m000055 N 0.000
29692.m000540 Ricinus communis 29692.m000540 N 0.000
TCM_010965 Theobroma cacao TCM_010965 N 0.000
VIT_14s0006g00640 Vitis vinifera VIT_14s0006g00640 I 0.000