POPTR_0002s24990 (Populus trichocarpa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 POPTR_0002s24990 T043778_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH78
M01713_2.00 		Arabidopsis thaliana
GCACGTGC
GCACGTGC		 PBM
Weirauch et al.(2014)
pTH7666 		0.914 0.980
BPE
M01700_2.00 		Arabidopsis thaliana
NCACGTNNN
NNNACGTGN		 PBM
Weirauch et al.(2014)
pTH7290 		0.901 0.900
BPE
M06726_2.00 		Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB
VWNNNNNCACGTGNNNNNNNN		 Dap-seq
OMalley et al.(2016)
bHLH31_col 		0.901 0.900
PK06517.1
M01122_2.00 		Cannabis sativa
NCACGTGC
GCACGTGN		 PBM
Lambert et al.(2019)
pTH10104 		0.888 0.960
BHLH49
M01052_2.00 		Arabidopsis thaliana
NNCACGTGCN
NGCACGTGNN		 PBM
Sullivan et al.(2014)
pTH7309 		0.888 0.940
gw1.270.82.1
M01758_2.00 		Physcomitrella patens
NCACGTGH
DCACGTGN		 PBM
Weirauch et al.(2014)
pTH8457 		0.875 0.920
BHLH74
M06720_2.00 		Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW
WNNNNBCACGTGNNHNHSDHS		 Dap-seq
OMalley et al.(2016)
bHLH74_col_a 		0.875 0.900
BHLH74
M06721_2.00 		Arabidopsis thaliana
CACGTGAY
RTCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a 		0.875 0.900
BHLH77
M06736_2.00 		Arabidopsis thaliana
NKCACGTGVHNWHNB
VNDWNDBCACGTGMN		 Dap-seq
OMalley et al.(2016)
bHLH77_col_a 		0.875 0.900
PK05923.1
M01121_2.00 		Cannabis sativa
NNNNNNN
NNNNNNN		 PBM
Lambert et al.(2019)
pTH11368 		0.868 0.800
BEE2
M01708_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8094 		0.864 0.860
AT2G18300
M01702_2.00 		Arabidopsis thaliana
NBCACGTGCNNN
NNNGCACGTGVN		 PBM
Weirauch et al.(2014)
pTH7289 		0.864 0.840
AT2G18300
M06729_2.00 		Arabidopsis thaliana
ACTGGT
ACCAGT		 Dap-seq
OMalley et al.(2016)
bHLH64_col_a 		0.864 0.840
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s24990.1 bHLH 366 415

Links

Other bHLH family TFs
Other Populus trichocarpa TFs

884 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00137p00051070 Amborella trichopoda AMTR_s00137p00051070 N
AMTR_s00137p00087340 Amborella trichopoda AMTR_s00137p00087340 N
Aquca_042_00143 Aquilegia coerulea Aquca_042_00143 N
LBD39 Arabidopsis lyrata fgenesh2_kg.7__297__AT4G37540.1 N
LBD37 Arabidopsis lyrata fgenesh2_kg.8__2670__AT5G67420.1 N
LBD38 Arabidopsis lyrata scaffold_502015.1 N
LBD38 Arabidopsis thaliana AT3G49940 N
LBD39 Arabidopsis thaliana AT4G37540 N
LBD37 Arabidopsis thaliana AT5G67420 N
Bostr.0568s0168 Boechera stricta Bostr.0568s0168 N
Bostr.6864s0247 Boechera stricta Bostr.6864s0247 N
Bostr.7867s1612 Boechera stricta Bostr.7867s1612 N
BRADI1G14780 Brachypodium distachyon BRADI1G14780 N
BRADI1G22920 Brachypodium distachyon BRADI1G22920 N
Bo1g003550 Brassica oleracea Bo1g003550 N
Bo5g132850 Brassica oleracea Bo5g132850 N
Bo7g063630 Brassica oleracea Bo7g063630 N
Bo7g099150 Brassica oleracea Bo7g099150 N
Bo7g118580 Brassica oleracea Bo7g118580 N
Bo8g079200 Brassica oleracea Bo8g079200 N
Bo9g018500 Brassica oleracea Bo9g018500 N
Bo9g019150 Brassica oleracea Bo9g019150 N
Bra011772 Brassica rapa Bra011772 N
Bra012164 Brassica rapa Bra012164 N
Bra012913 Brassica rapa Bra012913 N
Bra017831 Brassica rapa Bra017831 N
Bra031833 Brassica rapa Bra031833 N
Bra036040 Brassica rapa Bra036040 N
Bra037847 Brassica rapa Bra037847 N
PK03075.1 Cannabis sativa PK03075.1 N
PK03977.1 Cannabis sativa PK03977.1 N
PK15647.1 Cannabis sativa PK15647.1 N
PK25954.1 Cannabis sativa PK25954.1 N
PK29811.1 Cannabis sativa PK29811.1 N
Cagra.0342s0030 Capsella grandiflora Cagra.0342s0030 N
Cagra.10957s0002 Capsella grandiflora Cagra.10957s0002 N
Cagra.4491s0014 Capsella grandiflora Cagra.4491s0014 N
Carubv10005616m.g Capsella rubella Carubv10005616m.g N
Carubv10017944m.g Capsella rubella Carubv10017944m.g N
Carubv10027507m.g Capsella rubella Carubv10027507m.g N
evm.TU.supercontig_106.63 Carica papaya evm.TU.supercontig_106.63 N
evm.TU.supercontig_21.100 Carica papaya evm.TU.supercontig_21.100 N
evm.TU.supercontig_6.40 Carica papaya evm.TU.supercontig_6.40 N
Ca_02208 Cicer arietinum Ca_02208 N
Ca_09342 Cicer arietinum Ca_09342 N
Cla014228 Citrullus lanatus Cla014228 N
Cla020920 Citrullus lanatus Cla020920 N
Ciclev10003746m.g Citrus clementina Ciclev10003746m.g N
Ciclev10026374m.g Citrus clementina Ciclev10026374m.g N
Ciclev10029274m.g Citrus clementina Ciclev10029274m.g N
orange1.1g026365m.g Citrus sinensis orange1.1g026365m.g N
orange1.1g029809m.g Citrus sinensis orange1.1g029809m.g N
orange1.1g029970m.g Citrus sinensis orange1.1g029970m.g N
Cucsa.103050 Cucumis sativus Cucsa.103050 N
Cucsa.352730 Cucumis sativus Cucsa.352730 N
Eucgr.F00115 Eucalyptus grandis Eucgr.F00115 N
Eucgr.G01261 Eucalyptus grandis Eucgr.G01261 N
Eucgr.H02293 Eucalyptus grandis Eucgr.H02293 N
Thhalv10004811m.g Eutrema salsugineum Thhalv10004811m.g N
Thhalv10010666m.g Eutrema salsugineum Thhalv10010666m.g N
Thhalv10026086m.g Eutrema salsugineum Thhalv10026086m.g N
gene02557-v1.0-hybrid Fragaria vesca gene02557-v1.0-hybrid N
gene05722-v1.0-hybrid Fragaria vesca gene05722-v1.0-hybrid N
gene25541-v1.0-hybrid Fragaria vesca gene25541-v1.0-hybrid N
GLYMA01G40010 Glycine max GLYMA01G40010 N
GLYMA04G04750 Glycine max GLYMA04G04750 N
GLYMA05G22120 Glycine max GLYMA05G22120 N
GLYMA10G40421 Glycine max GLYMA10G40421 N
GLYMA11G05280 Glycine max GLYMA11G05280 N
GLYMA14G09750 Glycine max GLYMA14G09750 N
GLYMA17G17540 Glycine max GLYMA17G17540 N
GLYMA17G35440 Glycine max GLYMA17G35440 N
GLYMA20G26910 Glycine max GLYMA20G26910 N
Gorai.005G190300 Gossypium raimondii Gorai.005G190300 N
Gorai.005G232500 Gossypium raimondii Gorai.005G232500 N
Gorai.007G056300 Gossypium raimondii Gorai.007G056300 N
Gorai.007G222000 Gossypium raimondii Gorai.007G222000 N
Gorai.008G081100 Gossypium raimondii Gorai.008G081100 N
Gorai.009G218800 Gossypium raimondii Gorai.009G218800 N
Gorai.010G025100 Gossypium raimondii Gorai.010G025100 N
MLOC_11838 Hordeum vulgare MLOC_11838 N
MLOC_51325 Hordeum vulgare MLOC_51325 N
LPERR01G01830 Leersia perrieri LPERR01G01830 N
LPERR03G19360 Leersia perrieri LPERR03G19360 N
LPERR03G21440 Leersia perrieri LPERR03G21440 N
LPERR07G17890 Leersia perrieri LPERR07G17890 N
LPERR07G17900 Leersia perrieri LPERR07G17900 N
Lus10007758.g Linum usitatissimum Lus10007758.g N
Lus10011530.g Linum usitatissimum Lus10011530.g N
Lus10018697.g Linum usitatissimum Lus10018697.g N
Lus10019292.g Linum usitatissimum Lus10019292.g N
chr1.CM0088.550.nd Lotus japonicus chr1.CM0088.550.nd N
chr4.CM0128.270.nc Lotus japonicus chr4.CM0128.270.nc N
chr5.CM0200.600.nd Lotus japonicus chr5.CM0200.600.nd N
LjSGA_036652.1 Lotus japonicus LjSGA_036652.1 N
MDP0000139025 Malus domestica MDP0000139025 N
MDP0000151330 Malus domestica MDP0000151330 N
MDP0000239820 Malus domestica MDP0000239820 N
MDP0000247079 Malus domestica MDP0000247079 N
MDP0000261146 Malus domestica MDP0000261146 N
MDP0000487015 Malus domestica MDP0000487015 N
MDP0000747679 Malus domestica MDP0000747679 N
MDP0000794101 Malus domestica MDP0000794101 N
cassava22449.valid.m1 Manihot esculenta cassava22449.valid.m1 N
cassava226.valid.m1 Manihot esculenta cassava226.valid.m1 N
cassava35733.valid.m1 Manihot esculenta cassava35733.valid.m1 N
cassava7497.valid.m1 Manihot esculenta cassava7497.valid.m1 N
cassava9459.m1 Manihot esculenta cassava9459.m1 N
MTR_1g106420 Medicago truncatula MTR_1g106420 N
MTR_4g095600 Medicago truncatula MTR_4g095600 N
MTR_5g015880 Medicago truncatula MTR_5g015880 N
mgf007319m Mimulus guttatus mgf007319m N
mgf016023m Mimulus guttatus mgf016023m N
mgf016064m Mimulus guttatus mgf016064m N
mgf017790m Mimulus guttatus mgf017790m N
GSMUA_Achr2G13440_001 Musa acuminata GSMUA_Achr2G13440_001 N
GSMUA_Achr3G18860_001 Musa acuminata GSMUA_Achr3G18860_001 N
GSMUA_Achr3G30130_001 Musa acuminata GSMUA_Achr3G30130_001 N
GSMUA_Achr4G14150_001 Musa acuminata GSMUA_Achr4G14150_001 N
GSMUA_Achr4G32550_001 Musa acuminata GSMUA_Achr4G32550_001 N
GSMUA_Achr6G07770_001 Musa acuminata GSMUA_Achr6G07770_001 N
GSMUA_Achr7G26260_001 Musa acuminata GSMUA_Achr7G26260_001 N
OBART01G01940 Oryza barthii OBART01G01940 N
OBART03G22820 Oryza barthii OBART03G22820 N
OBART03G25820 Oryza barthii OBART03G25820 N
OBART07G20600 Oryza barthii OBART07G20600 N
OB01G11830 Oryza brachyantha OB01G11830 N
OB03G31560 Oryza brachyantha OB03G31560 N
OB03G33950 Oryza brachyantha OB03G33950 N
ORGLA01G0016600 Oryza glaberrima ORGLA01G0016600 N
ORGLA03G0213800 Oryza glaberrima ORGLA03G0213800 N
ORGLA03G0239300 Oryza glaberrima ORGLA03G0239300 N
ORGLA07G0157700 Oryza glaberrima ORGLA07G0157700 N
OGLUM01G02100 Oryza glumaepatula OGLUM01G02100 N
OGLUM03G23580 Oryza glumaepatula OGLUM03G23580 N
OGLUM03G26640 Oryza glumaepatula OGLUM03G26640 N
OGLUM07G20380 Oryza glumaepatula OGLUM07G20380 N
BGIOSGA002703 Oryza indica BGIOSGA002703 N
BGIOSGA010258 Oryza indica BGIOSGA010258 N
BGIOSGA010454 Oryza indica BGIOSGA010454 N
BGIOSGA026049 Oryza indica BGIOSGA026049 N
OLONG_008015 Oryza longistaminata OLONG_008015 N
OLONG_015384 Oryza longistaminata OLONG_015384 N
OMERI03G20600 Oryza meridionalis OMERI03G20600 N
OMERI07G17270 Oryza meridionalis OMERI07G17270 N
ONIVA01G02110 Oryza nivara ONIVA01G02110 N
ONIVA03G24370 Oryza nivara ONIVA03G24370 N
ONIVA03G26970 Oryza nivara ONIVA03G26970 N
ONIVA07G19050 Oryza nivara ONIVA07G19050 N
OPUNC01G01670 Oryza punctata OPUNC01G01670 N
OPUNC03G21330 Oryza punctata OPUNC03G21330 N
OPUNC03G23160 Oryza punctata OPUNC03G23160 N
OPUNC07G19440 Oryza punctata OPUNC07G19440 N
OPUNC07G19460 Oryza punctata OPUNC07G19460 N
ORUFI01G02010 Oryza rufipogon ORUFI01G02010 N
ORUFI03G23490 Oryza rufipogon ORUFI03G23490 N
ORUFI03G26700 Oryza rufipogon ORUFI03G26700 N
ORUFI07G21460 Oryza rufipogon ORUFI07G21460 N
OS03G0445700 Oryza sativa OS03G0445700 N
OS03G0609500 Oryza sativa OS03G0609500 N
OS07G0589000 Oryza sativa OS07G0589000 N
Pavir.Ba01055 Panicum virgatum Pavir.Ba01055 N
Pavir.Bb01170 Panicum virgatum Pavir.Bb01170 N
Pavir.Ea00650 Panicum virgatum Pavir.Ea00650 N
Pavir.Ia03080 Panicum virgatum Pavir.Ia03080 N
Pavir.J11724 Panicum virgatum Pavir.J11724 N
Pavir.J16587 Panicum virgatum Pavir.J16587 N
Pavir.J18418 Panicum virgatum Pavir.J18418 N
e_gw1.19.226.1 Physcomitrella patens e_gw1.19.226.1 N
e_gw1.454.18.1 Physcomitrella patens e_gw1.454.18.1 N
estExt_gwp_gw1.C_2030014 Physcomitrella patens estExt_gwp_gw1.C_2030014 N
gw1.167.132.1 Physcomitrella patens gw1.167.132.1 N
gw1.41.215.1 Physcomitrella patens gw1.41.215.1 N
POPTR_0001s30280 Populus trichocarpa POPTR_0001s30280 N
POPTR_0002s12020 Populus trichocarpa POPTR_0002s12020 N
POPTR_0005s18900 Populus trichocarpa POPTR_0005s18900 N
POPTR_0007s10010 Populus trichocarpa POPTR_0007s10010 N
POPTR_0009s09270 Populus trichocarpa POPTR_0009s09270 N
POPTR_0014s01770 Populus trichocarpa POPTR_0014s01770 N
Pm002404 Prunus mume Pm002404 N
Pm005389 Prunus mume Pm005389 N
Pm021281 Prunus mume Pm021281 N
PRUPE_ppa010480mg Prunus persica PRUPE_ppa010480mg N
PRUPE_ppa014964mg Prunus persica PRUPE_ppa014964mg N
PRUPE_ppa022806mg Prunus persica PRUPE_ppa022806mg N
28152.m000905 Ricinus communis 28152.m000905 N
29661.m000902 Ricinus communis 29661.m000902 N
30170.m013752 Ricinus communis 30170.m013752 N
SapurV1A.0019s0260 Salix purpurea SapurV1A.0019s0260 N
SapurV1A.0116s0210 Salix purpurea SapurV1A.0116s0210 N
SapurV1A.0336s0110 Salix purpurea SapurV1A.0336s0110 N
SapurV1A.0476s0230 Salix purpurea SapurV1A.0476s0230 N
SapurV1A.0845s0090 Salix purpurea SapurV1A.0845s0090 N
SapurV1A.2860s0030 Salix purpurea SapurV1A.2860s0030 N
SELMODRAFT_105005 Selaginella moellendorffii SELMODRAFT_105005 N
SELMODRAFT_27399 Selaginella moellendorffii SELMODRAFT_27399 N
SELMODRAFT_37532 Selaginella moellendorffii SELMODRAFT_37532 N
SELMODRAFT_37566 Selaginella moellendorffii SELMODRAFT_37566 N
SELMODRAFT_37570 Selaginella moellendorffii SELMODRAFT_37570 N
SELMODRAFT_61520 Selaginella moellendorffii SELMODRAFT_61520 N
Si002412m.g Setaria italica Si002412m.g N
Si031011m.g Setaria italica Si031011m.g N
Si037275m.g Setaria italica Si037275m.g N
Si037346m.g Setaria italica Si037346m.g N
Solyc01g107190.2 Solanum lycopersicum Solyc01g107190.2 N
Solyc02g092550.2 Solanum lycopersicum Solyc02g092550.2 N
Solyc04g077990.2 Solanum lycopersicum Solyc04g077990.2 N
PGSC0003DMG400024936 Solanum tuberosum PGSC0003DMG400024936 N
PGSC0003DMG400025752 Solanum tuberosum PGSC0003DMG400025752 N
Sb01g031790 Sorghum bicolor Sb01g031790 N
Sb02g038030 Sorghum bicolor Sb02g038030 N
Sb03g007270 Sorghum bicolor Sb03g007270 N
TCM_000766 Theobroma cacao TCM_000766 N
TCM_007211 Theobroma cacao TCM_007211 N
TCM_009888 Theobroma cacao TCM_009888 N
TCM_034722 Theobroma cacao TCM_034722 N
Traes_2AS_942884399 Triticum aestivum Traes_2AS_942884399 N
Traes_2BS_5DF7F4FEE Triticum aestivum Traes_2BS_5DF7F4FEE N
Traes_4AL_7241716B6 Triticum aestivum Traes_4AL_7241716B6 N
Traes_4BL_D44ACD58E Triticum aestivum Traes_4BL_D44ACD58E N
Traes_4BS_3BCDF0612 Triticum aestivum Traes_4BS_3BCDF0612 N
Traes_4DS_9575221BB Triticum aestivum Traes_4DS_9575221BB N
TRIUR3_28321 Triticum urartu TRIUR3_28321 N
VIT_03s0091g00670 Vitis vinifera VIT_03s0091g00670 N
VIT_07s0129g00330 Vitis vinifera VIT_07s0129g00330 N
VIT_18s0001g09250 Vitis vinifera VIT_18s0001g09250 N
GRMZM2G017319 Zea mays GRMZM2G017319 N
GRMZM2G044902 Zea mays GRMZM2G044902 N
GRMZM2G132693 Zea mays GRMZM2G132693 N
GRMZM2G177110 Zea mays GRMZM2G177110 N