cassava29310.valid.m1 (Manihot esculenta)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 cassava29310.valid.m1 T048021_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH49
M01052_2.00 		Arabidopsis thaliana
NNCACGTGCN
NGCACGTGNN		 PBM
Sullivan et al.(2014)
pTH7309 		0.914 0.980
PK06517.1
M01122_2.00 		Cannabis sativa
NCACGTGC
GCACGTGN		 PBM
Lambert et al.(2019)
pTH10104 		0.914 0.941
gw1.270.82.1
M01758_2.00 		Physcomitrella patens
NCACGTGH
DCACGTGN		 PBM
Weirauch et al.(2014)
pTH8457 		0.902 0.961
BHLH74
M06720_2.00 		Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW
WNNNNBCACGTGNNHNHSDHS		 Dap-seq
OMalley et al.(2016)
bHLH74_col_a 		0.902 0.902
BHLH74
M06721_2.00 		Arabidopsis thaliana
CACGTGAY
RTCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a 		0.902 0.902
BHLH77
M06736_2.00 		Arabidopsis thaliana
NKCACGTGVHNWHNB
VNDWNDBCACGTGMN		 Dap-seq
OMalley et al.(2016)
bHLH77_col_a 		0.902 0.863
BHLH78
M01713_2.00 		Arabidopsis thaliana
GCACGTGC
GCACGTGC		 PBM
Weirauch et al.(2014)
pTH7666 		0.888 0.902
BPE
M01700_2.00 		Arabidopsis thaliana
NCACGTNNN
NNNACGTGN		 PBM
Weirauch et al.(2014)
pTH7290 		0.875 0.843
BPE
M06726_2.00 		Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB
VWNNNNNCACGTGNNNNNNNN		 Dap-seq
OMalley et al.(2016)
bHLH31_col 		0.875 0.843
BEE2
M01708_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8094 		0.864 0.804
AT2G18300
M01702_2.00 		Arabidopsis thaliana
NBCACGTGCNNN
NNNGCACGTGVN		 PBM
Weirauch et al.(2014)
pTH7289 		0.864 0.784
AT2G18300
M06729_2.00 		Arabidopsis thaliana
ACTGGT
ACCAGT		 Dap-seq
OMalley et al.(2016)
bHLH64_col_a 		0.864 0.784
PK05923.1
M01121_2.00 		Cannabis sativa
NNNNNNN
NNNNNNN		 PBM
Lambert et al.(2019)
pTH11368 		0.842 0.765
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava29310.valid.m1 bHLH 377 427

Links

Other bHLH family TFs
Other Manihot esculenta TFs

901 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_20715 Aegilops tauschii F775_20715 I 0.000
F775_21760 Aegilops tauschii F775_21760 I 0.000
F775_25656 Aegilops tauschii F775_25656 I 0.000
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.000
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.000
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.000
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.000
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.000
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I 0.000
LBD10 Arabidopsis lyrata scaffold_400352.1 I 0.000
LOB Arabidopsis lyrata scaffold_802995.1 I 0.000
LBD6 Arabidopsis thaliana AT1G65620 D 0.000
LBD10 Arabidopsis thaliana AT2G23660 I 0.000
LOB Arabidopsis thaliana AT5G63090 D 0.000
LBD36 Arabidopsis thaliana AT5G66870 I 0.000
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.000
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.000
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.000
Bostr.27895s0126 Boechera stricta Bostr.27895s0126 N 0.000
BRADI1G14677 Brachypodium distachyon BRADI1G14677 N 0.000
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.000
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.000
BRADI2G57380 Brachypodium distachyon BRADI2G57380 I 0.000
Bo2g051420 Brassica oleracea Bo2g051420 I 0.000
Bo2g167820 Brassica oleracea Bo2g167820 I 0.000
Bo3g104760 Brassica oleracea Bo3g104760 I 0.000
Bo7g064360 Brassica oleracea Bo7g064360 I 0.000
Bo7g085860 Brassica oleracea Bo7g085860 I 0.000
Bo9g017470 Brassica oleracea Bo9g017470 I 0.000
Bra012112 Brassica rapa Bra012112 I 0.000
Bra025294 Brassica rapa Bra025294 I 0.000
Bra038606 Brassica rapa Bra038606 I 0.000
Bra039733 Brassica rapa Bra039733 I 0.000
PK18922.1 Cannabis sativa PK18922.1 I 0.000
PK21617.1 Cannabis sativa PK21617.1 I 0.000
PK29334.1 Cannabis sativa PK29334.1 I 0.000
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.000
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.000
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.000
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.000
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.000
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.000
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.000
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.000
evm.TU.supercontig_6.423 Carica papaya evm.TU.supercontig_6.423 I 0.000
Ca_02124 Cicer arietinum Ca_02124 I 0.000
Ca_02125 Cicer arietinum Ca_02125 I 0.000
Ca_08824 Cicer arietinum Ca_08824 I 0.000
Ca_11161 Cicer arietinum Ca_11161 I 0.000
Ca_18206 Cicer arietinum Ca_18206 N 0.000
Ca_20200 Cicer arietinum Ca_20200 I 0.000
Cla005851 Citrullus lanatus Cla005851 I 0.000
Cla019510 Citrullus lanatus Cla019510 I 0.000
Cla020438 Citrullus lanatus Cla020438 I 0.000
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.000
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.000
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.000
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.000
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.000
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.000
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.000
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.000
Thhalv10000525m.g Eutrema salsugineum Thhalv10000525m.g I 0.000
Thhalv10004535m.g Eutrema salsugineum Thhalv10004535m.g I 0.000
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.000
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.000
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.000
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.000
gene30401-v1.0-hybrid Fragaria vesca gene30401-v1.0-hybrid I 0.000
GLYMA01G39060 Glycine max GLYMA01G39060 I 0.000
GLYMA04G11991 Glycine max GLYMA04G11991 I 0.000
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.000
GLYMA05G09950 Glycine max GLYMA05G09950 I 0.000
GLYMA06G11181 Glycine max GLYMA06G11181 I 0.000
GLYMA11G06210 Glycine max GLYMA11G06210 I 0.000
GLYMA11G17890 Glycine max GLYMA11G17890 I 0.000
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.000
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.000
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.000
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.000
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.000
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.000
Gorai.008G073400 Gossypium raimondii Gorai.008G073400 I 0.000
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.000
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.000
MLOC_72525 Hordeum vulgare MLOC_72525 I 0.000
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.000
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.000
LPERR03G21590 Leersia perrieri LPERR03G21590 I 0.000
Lus10005313.g Linum usitatissimum Lus10005313.g I 0.000
Lus10009337.g Linum usitatissimum Lus10009337.g I 0.000
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.000
Lus10016769.g Linum usitatissimum Lus10016769.g I 0.000
Lus10019633.g Linum usitatissimum Lus10019633.g I 0.000
Lus10022463.g Linum usitatissimum Lus10022463.g I 0.000
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.000
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.000
chr2.LjT16G06.10.nd Lotus japonicus chr2.LjT16G06.10.nd I 0.000
MDP0000130659 Malus domestica MDP0000130659 I 0.000
MDP0000197526 Malus domestica MDP0000197526 I 0.000
MDP0000254288 Malus domestica MDP0000254288 I 0.000
MDP0000273432 Malus domestica MDP0000273432 I 0.000
MDP0000310871 Malus domestica MDP0000310871 I 0.000
MDP0000562305 Malus domestica MDP0000562305 I 0.000
MDP0000643326 Malus domestica MDP0000643326 I 0.000
MDP0000777060 Malus domestica MDP0000777060 I 0.000
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.000
cassava16840.m1 Manihot esculenta cassava16840.m1 I 0.000
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.000
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.000
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.000
cassava32691.m1 Manihot esculenta cassava32691.m1 I 0.000
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.000
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.000
MTR_5g017950 Medicago truncatula MTR_5g017950 I 0.000
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.000
mgf004296m Mimulus guttatus mgf004296m I 0.000
mgf014755m Mimulus guttatus mgf014755m I 0.000
mgf024603m Mimulus guttatus mgf024603m I 0.000
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.000
OBART01G04470 Oryza barthii OBART01G04470 I 0.000
OBART01G39990 Oryza barthii OBART01G39990 I 0.000
OB01G14220 Oryza brachyantha OB01G14220 I 0.000
OB01G48740 Oryza brachyantha OB01G48740 I 0.000
OB03G34080 Oryza brachyantha OB03G34080 I 0.000
OB05G24560 Oryza brachyantha OB05G24560 I 0.000
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.000
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.000
ORGLA03G0240600 Oryza glaberrima ORGLA03G0240600 I 0.000
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.000
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.000
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.000
OGLUM03G26820 Oryza glumaepatula OGLUM03G26820 I 0.000
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.000
LBD6 Oryza indica BGIOSGA004955 I 0.000
BGIOSGA013119 Oryza indica BGIOSGA013119 I 0.000
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.000
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.000
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.000
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.000
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.000
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.000
ONIVA11G15310 Oryza nivara ONIVA11G15310 I 0.000
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.000
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.000
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.000
ORUFI03G26840 Oryza rufipogon ORUFI03G26840 I 0.000
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.000
OS01G0169400 Oryza sativa OS01G0169400 I 0.000
LBD6 Oryza sativa OS01G0889400 I 0.000
OS03G0612400 Oryza sativa OS03G0612400 I 0.000
OS05G0417000 Oryza sativa OS05G0417000 I 0.000
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.000
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.000
Pavir.Ib03943 Panicum virgatum Pavir.Ib03943 I 0.000
Pavir.J03238 Panicum virgatum Pavir.J03238 I 0.000
Pavir.J03307 Panicum virgatum Pavir.J03307 I 0.000
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.000
Pavir.J22284 Panicum virgatum Pavir.J22284 I 0.000
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.000
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.000
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.000
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.000
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I 0.000
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.000
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.000
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.000
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.000
Pm010483 Prunus mume Pm010483 I 0.000
Pm026450 Prunus mume Pm026450 I 0.000
PRUPE_ppa015145mg Prunus persica PRUPE_ppa015145mg I 0.000
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.000
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.000
29676.m001633 Ricinus communis 29676.m001633 I 0.000
29929.m004500 Ricinus communis 29929.m004500 I 0.000
30147.m013890 Ricinus communis 30147.m013890 I 0.000
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.000
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.000
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.000
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.000
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.000
SapurV1A.0811s0010 Salix purpurea SapurV1A.0811s0010 I 0.000
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.000
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.000
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.000
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.000
Si002599m.g Setaria italica Si002599m.g I 0.000
Si002632m.g Setaria italica Si002632m.g I 0.000
Si024114m.g Setaria italica Si024114m.g I 0.000
Si036905m.g Setaria italica Si036905m.g I 0.000
Solyc02g065150.1 Solanum lycopersicum Solyc02g065150.1 I 0.000
Solyc02g090410.2 Solanum lycopersicum Solyc02g090410.2 I 0.000
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.000
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.000
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.000
PGSC0003DMG400010023 Solanum tuberosum PGSC0003DMG400010023 I 0.000
PGSC0003DMG401000764 Solanum tuberosum PGSC0003DMG401000764 I 0.000
PGSC0003DMG402000764 Solanum tuberosum PGSC0003DMG402000764 I 0.000
Sb01g014650 Sorghum bicolor Sb01g014650 I 0.000
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.000
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.000
Sb09g020440 Sorghum bicolor Sb09g020440 I 0.000
TCM_000560 Theobroma cacao TCM_000560 I 0.000
TCM_012190 Theobroma cacao TCM_012190 I 0.000
TCM_024217 Theobroma cacao TCM_024217 I 0.000
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.000
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.000
TRAES3BF084400010CFD_g Triticum aestivum TRAES3BF084400010CFD_g I 0.000
Traes_4AL_C060BF9F6 Triticum aestivum Traes_4AL_C060BF9F6 I 0.000
Traes_4BS_C1F4F41E9 Triticum aestivum Traes_4BS_C1F4F41E9 I 0.000
Traes_4DS_72ABC3EE5 Triticum aestivum Traes_4DS_72ABC3EE5 I 0.000
TRIUR3_06488 Triticum urartu TRIUR3_06488 I 0.000
TRIUR3_23928 Triticum urartu TRIUR3_23928 I 0.000
TRIUR3_32863 Triticum urartu TRIUR3_32863 I 0.000
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.000
AS2 Vitis vinifera VIT_00s0340g00090 I 0.000
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I 0.000
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I 0.000
VIT_07s0197g00030 Vitis vinifera VIT_07s0197g00030 I 0.000
VIT_07s0197g00040 Vitis vinifera VIT_07s0197g00040 I 0.000
VIT_16s0022g02050 Vitis vinifera VIT_16s0022g02050 I 0.000
LOB Vitis vinifera VIT_17s0000g09010 I 0.000
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.000
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.000
GRMZM2G154320 Zea mays GRMZM2G154320 N 0.000
GRMZM2G362627 Zea mays GRMZM2G362627 I 0.000