OMERI04G17450 (Oryza meridionalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 OMERI04G17450 T124898_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.786 0.844
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.786 0.822
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.785 0.800
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.769 0.667
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.765 0.667
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.764 0.644
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.764 0.644
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OMERI04G17450.1 C2H2 ZF 174 196
OMERI04G17450.1 C2H2 ZF 238 259

Links

Other C2H2 ZF family TFs
Other Oryza meridionalis TFs

166 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00133p00020030 Amborella trichopoda AMTR_s00133p00020030 N
Aquca_002_00510 Aquilegia coerulea Aquca_002_00510 N
ATWHY3 Arabidopsis lyrata fgenesh2_kg.5__172__AT2G02740.1 N
ATWHY1 Arabidopsis lyrata fgenesh2_kg.1__1569__AT1G14410.1 N
WHY1 Arabidopsis thaliana AT1G14410 N
WHY3 Arabidopsis thaliana AT2G02740 N
Bostr.0556s0088 Boechera stricta Bostr.0556s0088 N
BRADI1G51040 Brachypodium distachyon BRADI1G51040 N
Bo8g066030 Brassica oleracea Bo8g066030 N
Bo7g080560 Brassica oleracea Bo7g080560 N
Bra024809 Brassica rapa Bra024809 N
Bra016702 Brassica rapa Bra016702 N
PK22670.1 Cannabis sativa PK22670.1 N
Cagra.0534s0030 Capsella grandiflora Cagra.0534s0030 N
Cagra.3501s0060 Capsella grandiflora Cagra.3501s0060 N
Carubv10010024m.g Capsella rubella Carubv10010024m.g N
Carubv10017841m.g Capsella rubella Carubv10017841m.g N
evm.TU.supercontig_1007.4 Carica papaya evm.TU.supercontig_1007.4 N
Ca_24297 Cicer arietinum Ca_24297 N
Cla022217 Citrullus lanatus Cla022217 N
Ciclev10032427m.g Citrus clementina Ciclev10032427m.g N
orange1.1g024467m.g Citrus sinensis orange1.1g024467m.g N
Cucsa.005520 Cucumis sativus Cucsa.005520 N
Eucgr.G02539 Eucalyptus grandis Eucgr.G02539 N
Thhalv10004763m.g Eutrema salsugineum Thhalv10004763m.g N
GLYMA18G16200 Glycine max GLYMA18G16200 N
GLYMA08G40850 Glycine max GLYMA08G40850 N
Gorai.013G077400 Gossypium raimondii Gorai.013G077400 N
MLOC_11586 Hordeum vulgare MLOC_11586 N
LPERR06G02670 Leersia perrieri LPERR06G02670 N
Lus10036723.g Linum usitatissimum Lus10036723.g N
LjSGA_053590.1 Lotus japonicus LjSGA_053590.1 N
LjSGA_035916.1.1 Lotus japonicus LjSGA_035916.1.1 N
MDP0000268451 Malus domestica MDP0000268451 N
mgf002465m Mimulus guttatus mgf002465m N
GSMUA_Achr10G21100_001 Musa acuminata GSMUA_Achr10G21100_001 N
OBART06G03050 Oryza barthii OBART06G03050 N
ORGLA06G0029900 Oryza glaberrima ORGLA06G0029900 N
BGIOSGA022297 Oryza indica BGIOSGA022297 N
OMERI06G03280 Oryza meridionalis OMERI06G03280 N
OMERI07G11550 Oryza meridionalis OMERI07G11550 N
ONIVA06G03980 Oryza nivara ONIVA06G03980 N
OPUNC06G02750 Oryza punctata OPUNC06G02750 N
ORUFI06G03010 Oryza rufipogon ORUFI06G03010 N
OS06G0145800 Oryza sativa OS06G0145800 N
Pavir.Da02402 Panicum virgatum Pavir.Da02402 N
Pavir.Db02235 Panicum virgatum Pavir.Db02235 N
PDK_20s1701491g001 Phoenix dactylifera PDK_20s1701491g001 N
POPTR_0010s10260 Populus trichocarpa POPTR_0010s10260 N
POPTR_0008s14840 Populus trichocarpa POPTR_0008s14840 N
Pm006558 Prunus mume Pm006558 N
PRUPE_ppa009776mg Prunus persica PRUPE_ppa009776mg N
29736.m002027 Ricinus communis 29736.m002027 N
SapurV1A.0609s0180 Salix purpurea SapurV1A.0609s0180 N
Si006951m.g Setaria italica Si006951m.g N
Solyc05g007100.2 Solanum lycopersicum Solyc05g007100.2 N
PGSC0003DMG400017627 Solanum tuberosum PGSC0003DMG400017627 N
Sb10g003170 Sorghum bicolor Sb10g003170 N
TCM_011795 Theobroma cacao TCM_011795 N
Traes_7DS_B1FD1C84F Triticum aestivum Traes_7DS_B1FD1C84F N
Traes_7AS_45F0BB787 Triticum aestivum Traes_7AS_45F0BB787 N
Traes_4AL_FE94301FD Triticum aestivum Traes_4AL_FE94301FD N
VIT_01s0026g01720 Vitis vinifera VIT_01s0026g01720 N
GRMZM2G155662 Zea mays GRMZM2G155662 N