prdm6 (Xenopus tropicalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XB-GENE-854907 T145598_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM6
M08277_2.00 		Homo sapiens
TTTTYYWBHHTTTYYHYTBYN
NRVARDRRAAADDVWRRAAAA		 ChIP-seq
Schmitges et al.(2016)
Q9NQX0.MEME 		0.827 0.989
PRDM6
M08855_2.00 		Homo sapiens
NNKTTTTCYYBYB
VRVRRGAAAAMNN		 Misc
Kulakovskiy et al.(2013)
PRDM6_HUMAN.H11MO.0.C 		0.827 0.989
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002931772 C2H2 ZF 419 440
XP_002931772 C2H2 ZF 447 469
XP_002931772 C2H2 ZF 475 497
XP_002931772 C2H2 ZF 503 524

Links

Other C2H2 ZF family TFs
Other Xenopus tropicalis TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_005_00234 Aquilegia coerulea Aquca_005_00234 N
Bostr.5224s0004 Boechera stricta Bostr.5224s0004 N
Bo9g009240 Brassica oleracea Bo9g009240 N
Bra026077 Brassica rapa Bra026077 N
evm.TU.supercontig_136.17 Carica papaya evm.TU.supercontig_136.17 N
Ca_13855 Cicer arietinum Ca_13855 N
Ca_09696 Cicer arietinum Ca_09696 N
Eucgr.A01051 Eucalyptus grandis Eucgr.A01051 N
GLYMA18G09030 Glycine max GLYMA18G09030 N
GLYMA14G01960 Glycine max GLYMA14G01960 N
GLYMA09G22110 Glycine max GLYMA09G22110 N
GLYMA08G43780 Glycine max GLYMA08G43780 N
GLYMA02G46730 Glycine max GLYMA02G46730 N
Gorai.001G192800 Gossypium raimondii Gorai.001G192800 N
Lus10003772.g Linum usitatissimum Lus10003772.g N
chr6.LjT11E14.20.nc Lotus japonicus chr6.LjT11E14.20.nc N
LjSGA_018703.2 Lotus japonicus LjSGA_018703.2 N
MDP0000804652 Malus domestica MDP0000804652 N
MDP0000284679 Malus domestica MDP0000284679 N
MDP0000205236 Malus domestica MDP0000205236 N
MDP0000152670 Malus domestica MDP0000152670 N
cassava10826.m1 Manihot esculenta cassava10826.m1 N
cassava34106.m1 Manihot esculenta cassava34106.m1 N
cassava34699.m1 Manihot esculenta cassava34699.m1 N
MTR_5g094450 Medicago truncatula MTR_5g094450 N
SCL5 Populus trichocarpa POPTR_0001s37270 N
Pm015021 Prunus mume Pm015021 N
Pm012019 Prunus mume Pm012019 N
PRUPE_ppa004136mg Prunus persica PRUPE_ppa004136mg N
PRUPE_ppa003702mg Prunus persica PRUPE_ppa003702mg N
29949.m000124 Ricinus communis 29949.m000124 N
27613.m000642 Ricinus communis 27613.m000642 N
SapurV1A.0030s0420 Salix purpurea SapurV1A.0030s0420 N
SapurV1A.0054s0160 Salix purpurea SapurV1A.0054s0160 N
TCM_002319 Theobroma cacao TCM_002319 N
TCM_030733 Theobroma cacao TCM_030733 N
VIT_12s0057g00560 Vitis vinifera VIT_12s0057g00560 N
SCL5 Vitis vinifera VIT_19s0090g01740 N