CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
MTR_3g056110
(
Medicago truncatula
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
MTR_3g056110
T200536_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AES70512
GRAS
172
542
LKEMLYTCAKAVDENDIETIEWMVTELRKIVSVSGSPIERLGAYMLEALVSKIASSGSTIYKSLKCSEPTGNELLSYMHVLYEICPYFKFGYMSANGAIAEAMKEENEVHIIDFQIGQGTQWVSLIQALARRPGGPPKIRITGIDDSYSSNVRGGGVDIVGEKLLTLAQSCHVPFEFHAVRVYPSEVRLEDFELRPNEAVAVNFAIMLHHVPDESVNIHNHRDRLLRLAKHMSPKVVTLVEQEFNTNNAPFLQRFLETMNYYSAVYESIDVVLPRDHKERINVEQHCLAREVVNLVACEGEERVERHELLSKWRMRFTMAGFTPYPLSSFINSSIKNLLESYRGHYTLEERDGALFLGWMNQDLIASCAWR
Links
Other
GRAS
family TFs
Other
Medicago truncatula
TFs
38 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aquca_005_00234
Aquilegia coerulea
Aquca_005_00234
N
0.702
Bostr.5224s0004
Boechera stricta
Bostr.5224s0004
N
0.702
Bo9g009240
Brassica oleracea
Bo9g009240
N
0.710
Bra026077
Brassica rapa
Bra026077
N
0.712
evm.TU.supercontig_136.17
Carica papaya
evm.TU.supercontig_136.17
N
0.702
Ca_13855
Cicer arietinum
Ca_13855
N
0.916
Ca_09696
Cicer arietinum
Ca_09696
N
0.755
Eucgr.A01051
Eucalyptus grandis
Eucgr.A01051
N
0.702
GLYMA18G09030
Glycine max
GLYMA18G09030
N
0.835
GLYMA14G01960
Glycine max
GLYMA14G01960
N
0.772
GLYMA09G22110
Glycine max
GLYMA09G22110
N
0.734
GLYMA08G43780
Glycine max
GLYMA08G43780
N
0.835
GLYMA02G46730
Glycine max
GLYMA02G46730
N
0.789
Gorai.001G192800
Gossypium raimondii
Gorai.001G192800
N
0.707
Lus10003772.g
Linum usitatissimum
Lus10003772.g
N
0.700
chr6.LjT11E14.20.nc
Lotus japonicus
chr6.LjT11E14.20.nc
N
0.846
LjSGA_018703.2
Lotus japonicus
LjSGA_018703.2
N
0.825
MDP0000804652
Malus domestica
MDP0000804652
N
0.713
MDP0000284679
Malus domestica
MDP0000284679
N
0.707
MDP0000205236
Malus domestica
MDP0000205236
N
0.707
MDP0000152670
Malus domestica
MDP0000152670
N
0.715
cassava10826.m1
Manihot esculenta
cassava10826.m1
N
0.729
cassava34106.m1
Manihot esculenta
cassava34106.m1
N
0.702
cassava34699.m1
Manihot esculenta
cassava34699.m1
N
0.737
MTR_5g094450
Medicago truncatula
MTR_5g094450
N
0.758
SCL5
Populus trichocarpa
POPTR_0001s37270
N
0.713
Pm015021
Prunus mume
Pm015021
N
0.707
Pm012019
Prunus mume
Pm012019
N
0.718
PRUPE_ppa004136mg
Prunus persica
PRUPE_ppa004136mg
N
0.712
PRUPE_ppa003702mg
Prunus persica
PRUPE_ppa003702mg
N
0.710
29949.m000124
Ricinus communis
29949.m000124
N
0.710
27613.m000642
Ricinus communis
27613.m000642
N
0.732
SapurV1A.0030s0420
Salix purpurea
SapurV1A.0030s0420
N
0.702
SapurV1A.0054s0160
Salix purpurea
SapurV1A.0054s0160
N
0.702
TCM_002319
Theobroma cacao
TCM_002319
N
0.707
TCM_030733
Theobroma cacao
TCM_030733
N
0.710
VIT_12s0057g00560
Vitis vinifera
VIT_12s0057g00560
N
0.702
SCL5
Vitis vinifera
VIT_19s0090g01740
N
0.710