Bo3g143570 (Brassica oleracea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bo3g143570 T204901_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.827 0.930
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g143570.1 Homeodomain 37 93

Links

Other Homeodomain family TFs
Other Brassica oleracea TFs

112 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_01844 Aegilops tauschii F775_01844 I 0.645
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.628
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.683
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.832
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.712
RLT1 Arabidopsis thaliana AT1G28420 D 0.827
RLT2 Arabidopsis thaliana AT5G44180 I 0.695
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.831
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.712
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.652
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.645
Bo5g055970 Brassica oleracea Bo5g055970 I 0.834
Bo7g067190 Brassica oleracea Bo7g067190 I 0.699
Bra010869 Brassica rapa Bra010869 I 0.867
Bra032908 Brassica rapa Bra032908 I 0.833
Bra033725 Brassica rapa Bra033725 I 0.701
PK06068.1 Cannabis sativa PK06068.1 I 0.679
PK13272.1 Cannabis sativa PK13272.1 I 0.822
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.711
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.830
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.711
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.826
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.807
Ca_00337 Cicer arietinum Ca_00337 I 0.822
Ca_06343 Cicer arietinum Ca_06343 I 0.822
Ca_11272 Cicer arietinum Ca_11272 I 0.678
Cla009803 Citrullus lanatus Cla009803 I 0.826
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.667
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.826
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.826
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.667
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.826
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.799
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.700
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.712
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.833
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.650
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.826
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.690
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.822
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.822
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.822
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.667
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.810
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.810
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.645
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.646
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.687
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.814
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.802
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.826
Lus10017688.g Linum usitatissimum Lus10017688.g N 0.619
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.668
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.802
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.668
MDP0000192108 Malus domestica MDP0000192108 I 0.826
MDP0000288192 Malus domestica MDP0000288192 I 0.815
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.826
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.705
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.826
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.822
mgf006635m Mimulus guttatus mgf006635m I 0.776
mgf006858m Mimulus guttatus mgf006858m I 0.789
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.639
OBART05G25730 Oryza barthii OBART05G25730 I 0.687
OB01G35240 Oryza brachyantha OB01G35240 I 0.646
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.687
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.646
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.687
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.646
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.687
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.646
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.646
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.687
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.646
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.646
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.687
OS01G0672201 Oryza sativa OS01G0672201 I 0.646
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.643
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.643
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.636
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.704
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.818
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.705
Pm010098 Prunus mume Pm010098 I 0.826
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.826
29983.m003128 Ricinus communis 29983.m003128 I 0.705
30190.m011307 Ricinus communis 30190.m011307 I 0.761
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.826
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.828
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.704
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.705
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.704
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.704
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.611
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.611
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.656
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.656
Si004333m.g Setaria italica Si004333m.g I 0.646
Si020949m.g Setaria italica Si020949m.g I 0.644
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.804
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.684
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.646
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.646
TCM_008214 Theobroma cacao TCM_008214 I 0.667
TCM_029805 Theobroma cacao TCM_029805 I 0.810
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.823
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.717
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.646
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.644
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.644
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.646