CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Bra032908
(
Brassica rapa
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
Bra032908
T205170_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RLT1
M02038_2.00
Arabidopsis thaliana
NDHTCWWN
NWWGADHN
PBM
Weirauch et al.(2014)
pTH5432
0.860
0.947
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra032908.1-P
Homeodomain
39
95
KPKRQMKTPFQLQTLEQVYSEETYPSEATRAELSEKLDLSDRQLQMWFCHRRLKDKK
Links
Other
Homeodomain
family TFs
Other
Brassica rapa
TFs
111 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_01844
Aegilops tauschii
F775_01844
I
0.645
AMTR_s00058p00137050
Amborella trichopoda
AMTR_s00058p00137050
I
0.627
Aquca_051_00028
Aquilegia coerulea
Aquca_051_00028
I
0.716
HB-1
Arabidopsis lyrata
fgenesh2_kg.1__3015__AT1G28420.1
I
0.865
fgenesh2_kg.8__392__AT5G44180.1
Arabidopsis lyrata
fgenesh2_kg.8__392__AT5G44180.1
I
0.678
RLT1
Arabidopsis thaliana
AT1G28420
D
0.860
RLT2
Arabidopsis thaliana
AT5G44180
I
0.663
Bostr.15697s0165
Boechera stricta
Bostr.15697s0165
I
0.862
Bostr.3148s0041
Boechera stricta
Bostr.3148s0041
I
0.678
BRADI2G16647
Brachypodium distachyon
BRADI2G16647
I
0.651
BRADI2G46230
Brachypodium distachyon
BRADI2G46230
I
0.645
Bo3g143570
Brassica oleracea
Bo3g143570
I
0.833
Bo5g055970
Brassica oleracea
Bo5g055970
I
0.866
Bo7g067190
Brassica oleracea
Bo7g067190
I
0.667
Bra010869
Brassica rapa
Bra010869
I
0.833
Bra033725
Brassica rapa
Bra033725
I
0.668
PK06068.1
Cannabis sativa
PK06068.1
I
0.678
PK13272.1
Cannabis sativa
PK13272.1
I
0.853
Cagra.0381s0009
Capsella grandiflora
Cagra.0381s0009
I
0.679
Cagra.1822s0015
Capsella grandiflora
Cagra.1822s0015
I
0.863
Carubv10025737m.g
Capsella rubella
Carubv10025737m.g
I
0.679
evm.TU.supercontig_27.2
Carica papaya
evm.TU.supercontig_27.2
I
0.858
evm.TU.supercontig_83.97
Carica papaya
evm.TU.supercontig_83.97
I
0.773
Ca_00337
Cicer arietinum
Ca_00337
I
0.853
Ca_06343
Cicer arietinum
Ca_06343
I
0.853
Ca_11272
Cicer arietinum
Ca_11272
I
0.677
Cla009803
Citrullus lanatus
Cla009803
I
0.858
Ciclev10014022m.g
Citrus clementina
Ciclev10014022m.g
I
0.667
Ciclev10014023m.g
Citrus clementina
Ciclev10014023m.g
I
0.858
orange1.1g000279m.g
Citrus sinensis
orange1.1g000279m.g
I
0.858
orange1.1g004454m.g
Citrus sinensis
orange1.1g004454m.g
I
0.667
Cucsa.046480
Cucumis sativus
Cucsa.046480
I
0.858
Eucgr.D00596
Eucalyptus grandis
Eucgr.D00596
I
0.832
Eucgr.K01058
Eucalyptus grandis
Eucgr.K01058
I
0.667
Thhalv10003131m.g
Eutrema salsugineum
Thhalv10003131m.g
I
0.678
Thhalv10006543m.g
Eutrema salsugineum
Thhalv10006543m.g
I
0.864
gene17756-v1.0-hybrid
Fragaria vesca
gene17756-v1.0-hybrid
I
0.649
gene29752-v1.0-hybrid
Fragaria vesca
gene29752-v1.0-hybrid
I
0.858
GLYMA06G44290
Glycine max
GLYMA06G44290
I
0.656
GLYMA07G32180
Glycine max
GLYMA07G32180
I
0.853
GLYMA13G24370
Glycine max
GLYMA13G24370
I
0.853
GLYMA13G30860
Glycine max
GLYMA13G30860
I
0.853
Gorai.008G155100
Gossypium raimondii
Gorai.008G155100
I
0.667
Gorai.010G243500
Gossypium raimondii
Gorai.010G243500
I
0.842
Gorai.010G256900
Gossypium raimondii
Gorai.010G256900
I
0.842
MLOC_62571
Hordeum vulgare
MLOC_62571
I
0.645
LPERR01G22320
Leersia perrieri
LPERR01G22320
I
0.645
LPERR05G21380
Leersia perrieri
LPERR05G21380
I
0.687
Lus10013979.g
Linum usitatissimum
Lus10013979.g
I
0.847
Lus10015325.g
Linum usitatissimum
Lus10015325.g
I
0.835
Lus10015400.g
Linum usitatissimum
Lus10015400.g
I
0.859
Lus10018634.g
Linum usitatissimum
Lus10018634.g
I
0.635
Lus10025454.g
Linum usitatissimum
Lus10025454.g
I
0.835
Lus10039870.g
Linum usitatissimum
Lus10039870.g
I
0.635
MDP0000192108
Malus domestica
MDP0000192108
I
0.858
MDP0000288192
Malus domestica
MDP0000288192
I
0.846
cassava1593.valid.m1
Manihot esculenta
cassava1593.valid.m1
I
0.858
cassava43653.valid.m1
Manihot esculenta
cassava43653.valid.m1
I
0.671
MTR_2g014490
Medicago truncatula
MTR_2g014490
I
0.858
MTR_4g088375
Medicago truncatula
MTR_4g088375
I
0.853
mgf006635m
Mimulus guttatus
mgf006635m
I
0.808
mgf006858m
Mimulus guttatus
mgf006858m
I
0.823
GSMUA_Achr6G26980_001
Musa acuminata
GSMUA_Achr6G26980_001
I
0.671
OBART05G25730
Oryza barthii
OBART05G25730
I
0.687
OB01G35240
Oryza brachyantha
OB01G35240
I
0.645
ORGLA05G0222200
Oryza glaberrima
ORGLA05G0222200
I
0.687
OGLUM01G29920
Oryza glumaepatula
OGLUM01G29920
I
0.645
OGLUM05G27370
Oryza glumaepatula
OGLUM05G27370
I
0.687
BGIOSGA004179
Oryza indica
BGIOSGA004179
I
0.645
BGIOSGA022450
Oryza indica
BGIOSGA022450
I
0.687
OMERI01G23740
Oryza meridionalis
OMERI01G23740
I
0.645
ONIVA01G29520
Oryza nivara
ONIVA01G29520
I
0.645
ONIVA05G27640
Oryza nivara
ONIVA05G27640
I
0.687
OPUNC01G25990
Oryza punctata
OPUNC01G25990
I
0.645
ORUFI01G29060
Oryza rufipogon
ORUFI01G29060
I
0.645
ORUFI05G27630
Oryza rufipogon
ORUFI05G27630
I
0.687
OS01G0672201
Oryza sativa
OS01G0672201
I
0.645
Pavir.Ca00923
Panicum virgatum
Pavir.Ca00923
I
0.643
Pavir.J20612
Panicum virgatum
Pavir.J20612
I
0.643
fgenesh1_pg.scaffold_15000027
Physcomitrella patens
fgenesh1_pg.scaffold_15000027
I
0.635
POPTR_0007s01330
Populus trichocarpa
POPTR_0007s01330
I
0.672
POPTR_0011s05660
Populus trichocarpa
POPTR_0011s05660
I
0.850
POPTR_0017s04760
Populus trichocarpa
POPTR_0017s04760
I
0.671
Pm010098
Prunus mume
Pm010098
I
0.858
PRUPE_ppa000115mg
Prunus persica
PRUPE_ppa000115mg
I
0.858
29983.m003128
Ricinus communis
29983.m003128
I
0.671
30190.m011307
Ricinus communis
30190.m011307
I
0.793
SapurV1A.0012s0660
Salix purpurea
SapurV1A.0012s0660
I
0.858
SapurV1A.0032s0540
Salix purpurea
SapurV1A.0032s0540
I
0.859
SapurV1A.0118s0310
Salix purpurea
SapurV1A.0118s0310
I
0.672
SapurV1A.0693s0030
Salix purpurea
SapurV1A.0693s0030
I
0.671
SapurV1A.3333s0010
Salix purpurea
SapurV1A.3333s0010
I
0.672
SapurV1A.3547s0010
Salix purpurea
SapurV1A.3547s0010
I
0.672
SELMODRAFT_422900
Selaginella moellendorffii
SELMODRAFT_422900
I
0.643
SELMODRAFT_428998
Selaginella moellendorffii
SELMODRAFT_428998
I
0.643
SELMODRAFT_447019
Selaginella moellendorffii
SELMODRAFT_447019
I
0.655
SELMODRAFT_447089
Selaginella moellendorffii
SELMODRAFT_447089
I
0.655
Si004333m.g
Setaria italica
Si004333m.g
I
0.645
Si020949m.g
Setaria italica
Si020949m.g
I
0.643
Solyc02g077660.2
Solanum lycopersicum
Solyc02g077660.2
I
0.836
Solyc07g053610.2
Solanum lycopersicum
Solyc07g053610.2
I
0.683
Sb03g030770
Sorghum bicolor
Sb03g030770
I
0.645
Sb03g030782
Sorghum bicolor
Sb03g030782
I
0.645
TCM_008214
Theobroma cacao
TCM_008214
I
0.667
TCM_029805
Theobroma cacao
TCM_029805
I
0.842
VIT_10s0003g00290
Vitis vinifera
VIT_10s0003g00290
I
0.855
VIT_12s0028g03080
Vitis vinifera
VIT_12s0028g03080
I
0.683
GRMZM2G060541
Zea mays
GRMZM2G060541
I
0.645
GRMZM2G122750
Zea mays
GRMZM2G122750
I
0.643
GRMZM2G125294
Zea mays
GRMZM2G125294
I
0.643
GRMZM2G159357
Zea mays
GRMZM2G159357
I
0.645