GRMZM2G351330 (Zea mays)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 GRMZM2G351330 T219049_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-13
M06900_2.00 		Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB13_col_a 		0.754 0.607
ATHB-13
M06901_2.00 		Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN		 Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a 		0.754 0.607
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.749 0.643
ATHB-5
M06932_2.00 		Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_col_a 		0.734 0.625
ATHB-5
M06933_2.00 		Arabidopsis thaliana
NYAATMATTN
NAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a 		0.734 0.625
ATHB-5
M02684_2.00 		Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG		 SELEX
Mathelier et al.(2014)
MA0110.2 		0.734 0.625
ATHB-5
M10630_2.00 		Arabidopsis thaliana
CAATVATTG
CAATBATTG		 Transfac
Matys et al.(2006)
P$ATHB5_01 		0.734 0.625
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.716 0.589
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.716 0.589
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.716 0.589
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.716 0.589
HAT5
M06914_2.00 		Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN		 Dap-seq
OMalley et al.(2016)
HAT5_col_a 		0.704 0.607
HAT5
M06915_2.00 		Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW		 Dap-seq
OMalley et al.(2016)
HAT5_colamp_a 		0.704 0.607
HAT5
M02683_2.00 		Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS		 SELEX
Mathelier et al.(2014)
MA0008.2 		0.704 0.607
HAT5
M10624_2.00 		Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR		 Transfac
Matys et al.(2006)
P$ATHB1_01 		0.704 0.607
ATHB-21
M06907_2.00 		Arabidopsis thaliana
NNWHCAATWATTDN
NHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB21_col_a 		0.702 0.571
ATHB-21
M06908_2.00 		Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN
NNAHCAATWATTDNNNHHWW		 Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a 		0.702 0.571
HB-5
M06924_2.00 		Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH
DWWDNNNHMAATWATTGDTNN		 Dap-seq
OMalley et al.(2016)
ATHB40_col_a 		0.701 0.571
HB-5
M06925_2.00 		Arabidopsis thaliana
HHAATWATTGDWNN
NNWHCAATWATTDD		 Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a 		0.701 0.571
ATHB-53
M06934_2.00 		Arabidopsis thaliana
HMAATAATTRD
HYAATTATTKD		 Dap-seq
OMalley et al.(2016)
ATHB53_col_a 		0.696 0.554
ATHB-53
M06935_2.00 		Arabidopsis thaliana
NNWHCAATWATTDDN
NHHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a 		0.696 0.554
ATHB-7
M02043_2.00 		Arabidopsis thaliana
NHWTGATTGN
NCAATCAWDN		 PBM
Weirauch et al.(2014)
pTH8090 		0.688 0.714
ATHB-7
M06911_2.00 		Arabidopsis thaliana
NHYCAATCATTSW
WSAATGATTGRDN		 Dap-seq
OMalley et al.(2016)
ATHB7_col_a 		0.688 0.714
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.615 0.589
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.615 0.589
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G351330_P01 Homeodomain 55 111

Links

Other Homeodomain family TFs
Other Zea mays TFs

808 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_29723 Aegilops tauschii F775_29723 I
AMAG_02260 Allomyces macrogynus AMAG_02260 N
AMAG_00757 Allomyces macrogynus AMAG_00757 N
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I
ACEP16621 Atta cephalotes ACEP16621 N
BRADI2G33580 Brachypodium distachyon BRADI2G33580 N
Bo2g160920 Brassica oleracea Bo2g160920 I
Bra029371 Brassica rapa Bra029371 I
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N
Cla009222 Citrullus lanatus Cla009222 I
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N
Chro.20230 Cryptosporidium hominis Chro.20230 N
CMU_036990 Cryptosporidium muris CMU_036990 N
Cucsa.300030 Cucumis sativus Cucsa.300030 I
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I
MLOC_27773 Hordeum vulgare MLOC_27773 I
MLOC_6673 Hordeum vulgare MLOC_6673 N
LPERR01G05200 Leersia perrieri LPERR01G05200 N
MDP0000205665 Malus domestica MDP0000205665 I
OBART08G00070 Oryza barthii OBART08G00070 I
OBART01G05540 Oryza barthii OBART01G05540 N
OB01G15440 Oryza brachyantha OB01G15440 N
ORGLA01G0051500 Oryza glaberrima ORGLA01G0051500 N
OGLUM01G06010 Oryza glumaepatula OGLUM01G06010 N
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I
BGIOSGA002908 Oryza indica BGIOSGA002908 N
BGIOSGA027814 Oryza indica BGIOSGA027814 I
BGIOSGA027819 Oryza indica BGIOSGA027819 I
OLONG_014445 Oryza longistaminata OLONG_014445 I
OLONG_023518 Oryza longistaminata OLONG_023518 N
OMERI01G05760 Oryza meridionalis OMERI01G05760 N
ONIVA01G06280 Oryza nivara ONIVA01G06280 N
ONIVA08G00070 Oryza nivara ONIVA08G00070 I
OPUNC01G05380 Oryza punctata OPUNC01G05380 N
OPUNC02G20230 Oryza punctata OPUNC02G20230 N
OPUNC08G00150 Oryza punctata OPUNC08G00150 I
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I
ORUFI01G05970 Oryza rufipogon ORUFI01G05970 N
SSRP1-A Oryza sativa OS01G0184900 N
OS08G0101100 Oryza sativa OS08G0101100 I
OSTLU_18991 Ostreococcus lucimarinus OSTLU_18991 N
Pavir.J08546 Panicum virgatum Pavir.J08546 N
Pavir.Ea00282 Panicum virgatum Pavir.Ea00282 N
Pm006054 Prunus mume Pm006054 I
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I
30131.m007272 Ricinus communis 30131.m007272 I
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I
Si000646m.g Setaria italica Si000646m.g N
Si014434m.g Setaria italica Si014434m.g N
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I
Sb03g003450 Sorghum bicolor Sb03g003450 N
tetur02g08250 Tetranychus urticae tetur02g08250 N
TCM_007659 Theobroma cacao TCM_007659 I
Traes_1DS_C7F1E9F38 Triticum aestivum Traes_1DS_C7F1E9F38 I
Traes_1BS_15F9D276D Triticum aestivum Traes_1BS_15F9D276D I
Traes_1AS_3FCB35E65 Triticum aestivum Traes_1AS_3FCB35E65 I
HMGB6 Vitis vinifera VIT_10s0071g00870 I
GRMZM2G032252 Zea mays GRMZM2G032252 N