Brh_R009856 (Buceros rhinoceros)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Brh_R009856 T225365_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.834 1.000
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.790 0.945
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.788 0.945
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.788 0.945
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.788 0.945
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.780 0.909
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.780 0.909
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.780 0.909
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.780 0.909
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.780 0.909
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.780 0.909
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.780 0.909
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.780 0.909
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.780 0.909
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Brh_R009856 Homeodomain 1 58

Links

Other Homeodomain family TFs
Other Buceros rhinoceros TFs

394 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00026p00180130 Amborella trichopoda AMTR_s00026p00180130 I
Aquca_036_00070 Aquilegia coerulea Aquca_036_00070 I
fgenesh1_pm.C_scaffold_2001935 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2001935 N
ERF9 Arabidopsis lyrata fgenesh2_kg.8__388__AT5G44210.1 I
ATERF-4 Arabidopsis lyrata scaffold_301765.1 I
ERF084 Arabidopsis thaliana AT1G80580 N
ERF4 Arabidopsis thaliana AT3G15210 D
ERF9 Arabidopsis thaliana AT5G44210 D
Bostr.20129s0456 Boechera stricta Bostr.20129s0456 N
Bostr.28625s0184 Boechera stricta Bostr.28625s0184 I
Bostr.3148s0037 Boechera stricta Bostr.3148s0037 I
BRADI2G52370 Brachypodium distachyon BRADI2G52370 I
BRADI3G18070 Brachypodium distachyon BRADI3G18070 I
Bo2g095830 Brassica oleracea Bo2g095830 N
Bo2g122260 Brassica oleracea Bo2g122260 I
Bo3g066710 Brassica oleracea Bo3g066710 I
Bra001588 Brassica rapa Bra001588 I
Bra006325 Brassica rapa Bra006325 I
Bra008460 Brassica rapa Bra008460 N
Bra015266 Brassica rapa Bra015266 I
Bra036016 Brassica rapa Bra036016 I
PK02602.1 Cannabis sativa PK02602.1 I
PK19363.1 Cannabis sativa PK19363.1 D
Cagra.0897s0005 Capsella grandiflora Cagra.0897s0005 I
Cagra.1725s0082 Capsella grandiflora Cagra.1725s0082 N
Carubv10011371m.g Capsella rubella Carubv10011371m.g I
Carubv10014552m.g Capsella rubella Carubv10014552m.g I
Carubv10022119m.g Capsella rubella Carubv10022119m.g N
evm.TU.supercontig_10.125 Carica papaya evm.TU.supercontig_10.125 I
evm.TU.supercontig_131.83 Carica papaya evm.TU.supercontig_131.83 I
evm.TU.supercontig_27.16 Carica papaya evm.TU.supercontig_27.16 I
Ca_11261 Cicer arietinum Ca_11261 I
Ca_20041 Cicer arietinum Ca_20041 I
Ca_20544 Cicer arietinum Ca_20544 I
Ca_22534 Cicer arietinum Ca_22534 I
Cla002268 Citrullus lanatus Cla002268 I
Cla015583 Citrullus lanatus Cla015583 I
Cla020000 Citrullus lanatus Cla020000 I
Ciclev10009484m.g Citrus clementina Ciclev10009484m.g I
Ciclev10016276m.g Citrus clementina Ciclev10016276m.g I
Ciclev10016463m.g Citrus clementina Ciclev10016463m.g I
Ciclev10027171m.g Citrus clementina Ciclev10027171m.g I
orange1.1g026240m.g Citrus sinensis orange1.1g026240m.g I
orange1.1g028454m.g Citrus sinensis orange1.1g028454m.g I
orange1.1g047950m.g Citrus sinensis orange1.1g047950m.g I
Cucsa.046390 Cucumis sativus Cucsa.046390 I
Cucsa.105790 Cucumis sativus Cucsa.105790 I
Cucsa.126880 Cucumis sativus Cucsa.126880 I
Cucsa.195660 Cucumis sativus Cucsa.195660 I
Eucgr.F01164 Eucalyptus grandis Eucgr.F01164 I
Eucgr.F03941 Eucalyptus grandis Eucgr.F03941 N
Thhalv10000556m.g Eutrema salsugineum Thhalv10000556m.g N
Thhalv10003431m.g Eutrema salsugineum Thhalv10003431m.g I
Thhalv10019474m.g Eutrema salsugineum Thhalv10019474m.g N
Thhalv10021456m.g Eutrema salsugineum Thhalv10021456m.g I
gene15953-v1.0-hybrid Fragaria vesca gene15953-v1.0-hybrid I
gene29738-v1.0-hybrid Fragaria vesca gene29738-v1.0-hybrid I
GLYMA06G35710 Glycine max GLYMA06G35710 I
GLYMA07G03041 Glycine max GLYMA07G03041 I
GLYMA08G23074 Glycine max GLYMA08G23074 I
GLYMA08G43300 Glycine max GLYMA08G43300 I
GLYMA12G26836 Glycine max GLYMA12G26836 I
GLYMA12G35550 Glycine max GLYMA12G35550 I
GLYMA13G34920 Glycine max GLYMA13G34920 I
GLYMA18G10290 Glycine max GLYMA18G10290 I
Gorai.002G067600 Gossypium raimondii Gorai.002G067600 I
Gorai.006G088000 Gossypium raimondii Gorai.006G088000 I
Gorai.006G107500 Gossypium raimondii Gorai.006G107500 I
Gorai.009G125700 Gossypium raimondii Gorai.009G125700 N
Gorai.009G375700 Gossypium raimondii Gorai.009G375700 I
Gorai.010G155900 Gossypium raimondii Gorai.010G155900 I
Gorai.010G256600 Gossypium raimondii Gorai.010G256600 I
MLOC_24530 Hordeum vulgare MLOC_24530 I
LPERR01G29260 Leersia perrieri LPERR01G29260 I
LPERR05G17480 Leersia perrieri LPERR05G17480 I
Lus10014345.g Linum usitatissimum Lus10014345.g N
Lus10015415.g Linum usitatissimum Lus10015415.g I
Lus10026053.g Linum usitatissimum Lus10026053.g N
MDP0000264187 Malus domestica MDP0000264187 I
cassava1589.valid.m1 Manihot esculenta cassava1589.valid.m1 I
cassava20937.m1 Manihot esculenta cassava20937.m1 I
cassava37846.valid.m1 Manihot esculenta cassava37846.valid.m1 I
cassava38416.m1 Manihot esculenta cassava38416.m1 I
MTR_2g014340 Medicago truncatula MTR_2g014340 I
MTR_2g078680 Medicago truncatula MTR_2g078680 I
MTR_4g009260 Medicago truncatula MTR_4g009260 I
MTR_4g078710 Medicago truncatula MTR_4g078710 I
mgf023662m Mimulus guttatus mgf023662m I
GSMUA_Achr1G25890_001 Musa acuminata GSMUA_Achr1G25890_001 I
GSMUA_Achr4G23620_001 Musa acuminata GSMUA_Achr4G23620_001 I
GSMUA_Achr4G33270_001 Musa acuminata GSMUA_Achr4G33270_001 I
GSMUA_Achr6G00250_001 Musa acuminata GSMUA_Achr6G00250_001 I
GSMUA_Achr7G00350_001 Musa acuminata GSMUA_Achr7G00350_001 I
GSMUA_Achr7G03640_001 Musa acuminata GSMUA_Achr7G03640_001 I
GSMUA_Achr8G15830_001 Musa acuminata GSMUA_Achr8G15830_001 I
GSMUA_Achr8G33590_001 Musa acuminata GSMUA_Achr8G33590_001 I
GSMUA_Achr9G11480_001 Musa acuminata GSMUA_Achr9G11480_001 I
GSMUA_AchrUn_randomG16100_001 Musa acuminata GSMUA_AchrUn_randomG16100_001 I
OBART01G33870 Oryza barthii OBART01G33870 I
OBART05G21580 Oryza barthii OBART05G21580 I
OB01G42720 Oryza brachyantha OB01G42720 I
ORGLA01G0278100 Oryza glaberrima ORGLA01G0278100 I
ORGLA05G0187600 Oryza glaberrima ORGLA05G0187600 I
OGLUM01G38110 Oryza glumaepatula OGLUM01G38110 I
OGLUM05G22790 Oryza glumaepatula OGLUM05G22790 I
BGIOSGA004611 Oryza indica BGIOSGA004611 I
BGIOSGA017796 Oryza indica BGIOSGA017796 I
BGIOSGA019608 Oryza indica BGIOSGA019608 N
OLONG_021733 Oryza longistaminata OLONG_021733 I
OMERI01G30710 Oryza meridionalis OMERI01G30710 I
OMERI05G10040 Oryza meridionalis OMERI05G10040 N
OMERI05G19490 Oryza meridionalis OMERI05G19490 I
ONIVA01G38670 Oryza nivara ONIVA01G38670 I
ONIVA05G11840 Oryza nivara ONIVA05G11840 N
ONIVA05G22270 Oryza nivara ONIVA05G22270 I
OPUNC01G32930 Oryza punctata OPUNC01G32930 I
OPUNC05G19230 Oryza punctata OPUNC05G19230 I
ORUFI01G37120 Oryza rufipogon ORUFI01G37120 I
ORUFI05G12300 Oryza rufipogon ORUFI05G12300 N
ORUFI05G22850 Oryza rufipogon ORUFI05G22850 I
OS01G0797600 Oryza sativa OS01G0797600 I
OS05G0316800 Oryza sativa OS05G0316800 N
OS05G0497300 Oryza sativa OS05G0497300 I
Pavir.Ea03147 Panicum virgatum Pavir.Ea03147 I
Pavir.Eb03458 Panicum virgatum Pavir.Eb03458 I
Pavir.Fa01730 Panicum virgatum Pavir.Fa01730 I
Pavir.Fb00952 Panicum virgatum Pavir.Fb00952 I
Pavir.Fb01486 Panicum virgatum Pavir.Fb01486 I
Pavir.J14354 Panicum virgatum Pavir.J14354 I
e_gw1.14.213.1 Physcomitrella patens e_gw1.14.213.1 N
e_gw1.145.79.1 Physcomitrella patens e_gw1.145.79.1 N
e_gw1.15.234.1 Physcomitrella patens e_gw1.15.234.1 N
e_gw1.276.69.1 Physcomitrella patens e_gw1.276.69.1 N
fgenesh1_pg.scaffold_23000002 Physcomitrella patens fgenesh1_pg.scaffold_23000002 I
gw1.204.54.1 Physcomitrella patens gw1.204.54.1 N
gw1.340.39.1 Physcomitrella patens gw1.340.39.1 N
POPTR_0001s32050 Populus trichocarpa POPTR_0001s32050 I
POPTR_0001s40770 Populus trichocarpa POPTR_0001s40770 I
POPTR_0004s04720 Populus trichocarpa POPTR_0004s04720 I
POPTR_0011s05580 Populus trichocarpa POPTR_0011s05580 I
POPTR_0011s11620 Populus trichocarpa POPTR_0011s11620 I
POPTR_0013s15440 Populus trichocarpa POPTR_0013s15440 I
Pm011391 Prunus mume Pm011391 I
Pm013734 Prunus mume Pm013734 I
PRUPE_ppa010982mg Prunus persica PRUPE_ppa010982mg I
PRUPE_ppa020928mg Prunus persica PRUPE_ppa020928mg I
27446.m000475 Ricinus communis 27446.m000475 I
27904.m000217 Ricinus communis 27904.m000217 I
29983.m003147 Ricinus communis 29983.m003147 I
30190.m011321 Ricinus communis 30190.m011321 I
SapurV1A.0012s0580 Salix purpurea SapurV1A.0012s0580 I
SapurV1A.0058s0710 Salix purpurea SapurV1A.0058s0710 I
SapurV1A.1000s0130 Salix purpurea SapurV1A.1000s0130 I
SapurV1A.1244s0010 Salix purpurea SapurV1A.1244s0010 I
SapurV1A.1325s0040 Salix purpurea SapurV1A.1325s0040 I
SapurV1A.2062s0030 Salix purpurea SapurV1A.2062s0030 I
SELMODRAFT_412693 Selaginella moellendorffii SELMODRAFT_412693 N
SELMODRAFT_417258 Selaginella moellendorffii SELMODRAFT_417258 N
SELMODRAFT_428344 Selaginella moellendorffii SELMODRAFT_428344 N
SELMODRAFT_428599 Selaginella moellendorffii SELMODRAFT_428599 N
Si002729m.g Setaria italica Si002729m.g I
Si008428m.g Setaria italica Si008428m.g I
Si023088m.g Setaria italica Si023088m.g I
Q84LQ6_SOLLC Solanum lycopersicum Q84LQ6_SOLLC I
Q84XB1_SOLLC Solanum lycopersicum Q84XB1_SOLLC I
Solyc01g095500.2 Solanum lycopersicum Solyc01g095500.2 I
Solyc03g117230.1 Solanum lycopersicum Solyc03g117230.1 N
Solyc10g009110.1 Solanum lycopersicum Solyc10g009110.1 I
Solyc12g005960.1 Solanum lycopersicum Solyc12g005960.1 I
PGSC0003DMG400000091 Solanum tuberosum PGSC0003DMG400000091 I
PGSC0003DMG400010135 Solanum tuberosum PGSC0003DMG400010135 N
PGSC0003DMG400012828 Solanum tuberosum PGSC0003DMG400012828 I
PGSC0003DMG401013892 Solanum tuberosum PGSC0003DMG401013892 I
PGSC0003DMG402013892 Solanum tuberosum PGSC0003DMG402013892 I
TCM_027348 Theobroma cacao TCM_027348 I
TCM_029820 Theobroma cacao TCM_029820 I
TCM_031608 Theobroma cacao TCM_031608 I
TRAES3BF075600050CFD_g Triticum aestivum TRAES3BF075600050CFD_g I
VIT_09s0002g08830 Vitis vinifera VIT_09s0002g08830 I
VIT_10s0003g00140 Vitis vinifera VIT_10s0003g00140 I
VIT_19s0014g02240 Vitis vinifera VIT_19s0014g02240 I
GRMZM2G310368 Zea mays GRMZM2G310368 I