CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
mgf007384m
(
Mimulus guttatus
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
mgf007384m
T227697_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK24181.1
M01252_2.00
Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN
PBM
Lambert et al.(2019)
pTH11300
0.828
0.860
HDG11
M02039_2.00
Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH
PBM
Weirauch et al.(2014)
pTH7664
0.812
0.825
HDG11
M06904_2.00
Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH
Dap-seq
OMalley et al.(2016)
EDT1_col
0.812
0.825
ATML1
M02048_2.00
Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN
PBM
Weirauch et al.(2014)
pTH8203
0.804
0.719
ATML1
M10626_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ML1_01
0.804
0.719
PDF2
M06921_2.00
Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW
Dap-seq
OMalley et al.(2016)
PDF2_col
0.794
0.719
PDF2
M10625_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PDF2_01
0.794
0.719
HDG1
M06917_2.00
Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG1_col100_a
0.792
0.754
HDG1
M06918_2.00
Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG1_colamp_a
0.792
0.754
ANL2
M02046_2.00
Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN
PBM
Weirauch et al.(2014)
pTH8244
0.770
0.719
ANL2
M06919_2.00
Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
ANL2_col_a
0.770
0.719
ANL2
M06920_2.00
Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
ANL2_colamp_a
0.770
0.719
HDG9
M10628_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HDG9_01
0.767
0.649
HDG7
M06931_2.00
Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG7_col_a
0.728
0.632
HDG7
M10629_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HDG7_01
0.728
0.632
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mgf007384m
Homeodomain
24
81
RRKRYHRHTAHQIQSLEAMFKECQHPDEKTRNQLSRELNLNPRQIKFWFQNRRTQMKA
Links
Other
Homeodomain
family TFs
Other
Mimulus guttatus
TFs
613 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_02052
Aegilops tauschii
F775_02052
I
F775_22967
Aegilops tauschii
F775_22967
I
Aquca_034_00400
Aquilegia coerulea
Aquca_034_00400
I
Aquca_034_00401
Aquilegia coerulea
Aquca_034_00401
I
LBD29
Arabidopsis lyrata
fgenesh2_kg.5__2263__AT3G58190.1
I
LBD16
Arabidopsis lyrata
scaffold_403099.1
I
LBD16
Arabidopsis thaliana
AT2G42430
D
LBD29
Arabidopsis thaliana
AT3G58190
I
Bostr.20903s0070
Boechera stricta
Bostr.20903s0070
I
Bostr.25993s0538
Boechera stricta
Bostr.25993s0538
I
BRADI1G75110
Brachypodium distachyon
BRADI1G75110
I
BRADI1G75120
Brachypodium distachyon
BRADI1G75120
N
BRADI3G55680
Brachypodium distachyon
BRADI3G55680
I
Bo4g016000
Brassica oleracea
Bo4g016000
I
Bo4g108600
Brassica oleracea
Bo4g108600
I
Bo4g191530
Brassica oleracea
Bo4g191530
I
Bo8g092560
Brassica oleracea
Bo8g092560
I
Bra004693
Brassica rapa
Bra004693
I
Bra014581
Brassica rapa
Bra014581
I
Bra016876
Brassica rapa
Bra016876
N
Bra016877
Brassica rapa
Bra016877
I
Cagra.0686s0036
Capsella grandiflora
Cagra.0686s0036
I
Cagra.2636s0029
Capsella grandiflora
Cagra.2636s0029
I
Carubv10019250m.g
Capsella rubella
Carubv10019250m.g
I
Carubv10025548m.g
Capsella rubella
Carubv10025548m.g
I
evm.TU.supercontig_50.43
Carica papaya
evm.TU.supercontig_50.43
I
Ca_12214
Cicer arietinum
Ca_12214
I
Cla006088
Citrullus lanatus
Cla006088
I
Ciclev10024416m.g
Citrus clementina
Ciclev10024416m.g
I
orange1.1g040761m.g
Citrus sinensis
orange1.1g040761m.g
I
Cucsa.053440
Cucumis sativus
Cucsa.053440
I
Eucgr.K03284
Eucalyptus grandis
Eucgr.K03284
I
Thhalv10006226m.g
Eutrema salsugineum
Thhalv10006226m.g
I
Thhalv10017158m.g
Eutrema salsugineum
Thhalv10017158m.g
I
gene08250-v1.0-hybrid
Fragaria vesca
gene08250-v1.0-hybrid
I
GLYMA10G04040
Glycine max
GLYMA10G04040
I
GLYMA13G18191
Glycine max
GLYMA13G18191
I
GLYMA19G34590
Glycine max
GLYMA19G34590
I
Gorai.004G073300
Gossypium raimondii
Gorai.004G073300
I
Gorai.004G073400
Gossypium raimondii
Gorai.004G073400
I
Gorai.007G144400
Gossypium raimondii
Gorai.007G144400
I
MLOC_10783
Hordeum vulgare
MLOC_10783
N
MLOC_10784
Hordeum vulgare
MLOC_10784
I
MLOC_52276
Hordeum vulgare
MLOC_52276
I
MLOC_61947
Hordeum vulgare
MLOC_61947
I
LPERR02G31040
Leersia perrieri
LPERR02G31040
I
LPERR03G03460
Leersia perrieri
LPERR03G03460
I
LPERR03G03470
Leersia perrieri
LPERR03G03470
I
LPERR08G20530
Leersia perrieri
LPERR08G20530
I
Lus10000707.g
Linum usitatissimum
Lus10000707.g
I
Lus10024877.g
Linum usitatissimum
Lus10024877.g
I
MDP0000131964
Malus domestica
MDP0000131964
I
MDP0000145761
Malus domestica
MDP0000145761
I
cassava15612.m1
Manihot esculenta
cassava15612.m1
I
cassava40664.m1
Manihot esculenta
cassava40664.m1
I
GSMUA_Achr10G06700_001
Musa acuminata
GSMUA_Achr10G06700_001
I
GSMUA_Achr11G02110_001
Musa acuminata
GSMUA_Achr11G02110_001
I
GSMUA_Achr1G01350_001
Musa acuminata
GSMUA_Achr1G01350_001
I
GSMUA_Achr1G01360_001
Musa acuminata
GSMUA_Achr1G01360_001
I
GSMUA_Achr1G06580_001
Musa acuminata
GSMUA_Achr1G06580_001
I
GSMUA_Achr3G27340_001
Musa acuminata
GSMUA_Achr3G27340_001
I
GSMUA_Achr4G25190_001
Musa acuminata
GSMUA_Achr4G25190_001
I
GSMUA_Achr5G13230_001
Musa acuminata
GSMUA_Achr5G13230_001
I
GSMUA_Achr8G14330_001
Musa acuminata
GSMUA_Achr8G14330_001
I
GSMUA_AchrUn_randomG07730_001
Musa acuminata
GSMUA_AchrUn_randomG07730_001
I
GSMUA_AchrUn_randomG23710_001
Musa acuminata
GSMUA_AchrUn_randomG23710_001
I
OBART02G37570
Oryza barthii
OBART02G37570
I
OBART03G03820
Oryza barthii
OBART03G03820
I
OBART03G03830
Oryza barthii
OBART03G03830
I
OBART08G23860
Oryza barthii
OBART08G23860
I
OB02G44330
Oryza brachyantha
OB02G44330
I
OB03G13880
Oryza brachyantha
OB03G13880
I
OB03G13890
Oryza brachyantha
OB03G13890
I
OB08G30680
Oryza brachyantha
OB08G30680
I
ORGLA02G0327800
Oryza glaberrima
ORGLA02G0327800
I
ORGLA03G0035800
Oryza glaberrima
ORGLA03G0035800
I
ORGLA03G0035900
Oryza glaberrima
ORGLA03G0035900
I
ORGLA08G0192400
Oryza glaberrima
ORGLA08G0192400
I
OGLUM02G38740
Oryza glumaepatula
OGLUM02G38740
I
OGLUM03G03700
Oryza glumaepatula
OGLUM03G03700
I
OGLUM03G03710
Oryza glumaepatula
OGLUM03G03710
I
OGLUM08G25340
Oryza glumaepatula
OGLUM08G25340
I
BGIOSGA005344
Oryza indica
BGIOSGA005344
I
BGIOSGA011445
Oryza indica
BGIOSGA011445
I
BGIOSGA011866
Oryza indica
BGIOSGA011866
I
BGIOSGA026473
Oryza indica
BGIOSGA026473
I
OLONG_010223
Oryza longistaminata
OLONG_010223
I
OLONG_020840
Oryza longistaminata
OLONG_020840
N
OLONG_020841
Oryza longistaminata
OLONG_020841
I
OMERI02G35350
Oryza meridionalis
OMERI02G35350
I
OMERI07G01660
Oryza meridionalis
OMERI07G01660
I
OMERI07G01670
Oryza meridionalis
OMERI07G01670
N
OMERI08G18670
Oryza meridionalis
OMERI08G18670
I
ONIVA02G40360
Oryza nivara
ONIVA02G40360
I
ONIVA03G03570
Oryza nivara
ONIVA03G03570
I
ONIVA03G03580
Oryza nivara
ONIVA03G03580
I
ONIVA09G01330
Oryza nivara
ONIVA09G01330
I
OPUNC02G34750
Oryza punctata
OPUNC02G34750
I
OPUNC03G03510
Oryza punctata
OPUNC03G03510
I
OPUNC03G03520
Oryza punctata
OPUNC03G03520
I
OPUNC08G21770
Oryza punctata
OPUNC08G21770
I
ORUFI02G39110
Oryza rufipogon
ORUFI02G39110
I
ORUFI03G03540
Oryza rufipogon
ORUFI03G03540
I
ORUFI03G03550
Oryza rufipogon
ORUFI03G03550
I
ORUFI08G26340
Oryza rufipogon
ORUFI08G26340
I
OS02G0820500
Oryza sativa
OS02G0820500
I
OS03G0149000
Oryza sativa
OS03G0149000
I
OS03G0149100
Oryza sativa
OS03G0149100
I
OS08G0563400
Oryza sativa
OS08G0563400
I
Pavir.Aa00097
Panicum virgatum
Pavir.Aa00097
I
Pavir.Fa00011
Panicum virgatum
Pavir.Fa00011
I
Pavir.Ia04220
Panicum virgatum
Pavir.Ia04220
I
Pavir.Ib00282
Panicum virgatum
Pavir.Ib00282
I
Pavir.Ib00283
Panicum virgatum
Pavir.Ib00283
I
Pavir.J03376
Panicum virgatum
Pavir.J03376
I
Pavir.J24246
Panicum virgatum
Pavir.J24246
I
Pavir.J39638
Panicum virgatum
Pavir.J39638
I
PDK_20s1428661g002
Phoenix dactylifera
PDK_20s1428661g002
I
POPTR_0002s04200
Populus trichocarpa
POPTR_0002s04200
I
POPTR_0002s04210
Populus trichocarpa
POPTR_0002s04210
I
POPTR_0005s24320
Populus trichocarpa
POPTR_0005s24320
I
Pm020629
Prunus mume
Pm020629
I
PRUPE_ppa025349mg
Prunus persica
PRUPE_ppa025349mg
I
29883.m002035
Ricinus communis
29883.m002035
I
SapurV1A.0006s0980
Salix purpurea
SapurV1A.0006s0980
I
SapurV1A.0378s0180
Salix purpurea
SapurV1A.0378s0180
I
Si015156m.g
Setaria italica
Si015156m.g
I
Si019578m.g
Setaria italica
Si019578m.g
I
Si040019m.g
Setaria italica
Si040019m.g
I
Sb01g046990
Sorghum bicolor
Sb01g046990
I
Sb01g047000
Sorghum bicolor
Sb01g047000
I
Sb04g037550
Sorghum bicolor
Sb04g037550
I
Sb07g023810
Sorghum bicolor
Sb07g023810
I
TCM_004106
Theobroma cacao
TCM_004106
I
Traes_4AL_3BA1D51E2
Triticum aestivum
Traes_4AL_3BA1D51E2
N
Traes_4AL_CAF4E16B5
Triticum aestivum
Traes_4AL_CAF4E16B5
I
Traes_4BL_A4D0F4AD6
Triticum aestivum
Traes_4BL_A4D0F4AD6
I
Traes_4BL_F71DE14F7
Triticum aestivum
Traes_4BL_F71DE14F7
N
Traes_4BS_5D9291539
Triticum aestivum
Traes_4BS_5D9291539
I
Traes_4BS_B43A99154
Triticum aestivum
Traes_4BS_B43A99154
N
Traes_4DL_05F87867C
Triticum aestivum
Traes_4DL_05F87867C
N
Traes_4DL_43D63ABE3
Triticum aestivum
Traes_4DL_43D63ABE3
I
Traes_4DS_11C3B0459
Triticum aestivum
Traes_4DS_11C3B0459
I
Traes_6AL_D6045E37C
Triticum aestivum
Traes_6AL_D6045E37C
I
Traes_6BS_179B5B6E1
Triticum aestivum
Traes_6BS_179B5B6E1
I
Traes_6DL_850266B2A
Triticum aestivum
Traes_6DL_850266B2A
I
TRIUR3_01477
Triticum urartu
TRIUR3_01477
I
TRIUR3_07751
Triticum urartu
TRIUR3_07751
I
VIT_07s0005g03020
Vitis vinifera
VIT_07s0005g03020
I
LBD16
Vitis vinifera
VIT_07s0005g03030
I
AC149818.2_FG009
Zea mays
AC149818.2_FG009
I
GRMZM2G075499
Zea mays
GRMZM2G075499
I
GRMZM2G092483
Zea mays
GRMZM2G092483
I
GRMZM2G092542
Zea mays
GRMZM2G092542
I