Cagra.0050s0122 (Capsella grandiflora)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cagra.0050s0122 T228171_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.844 0.895
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.844 0.895
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.844 0.895
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.841 0.930
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.841 0.930
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.807 0.754
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.807 0.754
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.806 0.807
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.790 0.789
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.790 0.789
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.788 0.789
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.788 0.789
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.786 0.772
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.786 0.772
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.771 0.649
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0050s0122.1.p Homeodomain 95 151

Links

Other Homeodomain family TFs
Other Capsella grandiflora TFs

617 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK24260.1 Cannabis sativa PK24260.1 N
evm.TU.supercontig_34.62 Carica papaya evm.TU.supercontig_34.62 N
Ca_22597 Cicer arietinum Ca_22597 N
Ciclev10017679m.g Citrus clementina Ciclev10017679m.g I
Ciclev10016303m.g Citrus clementina Ciclev10016303m.g I
orange1.1g037956m.g Citrus sinensis orange1.1g037956m.g N
orange1.1g024860m.g Citrus sinensis orange1.1g024860m.g I
Eucgr.A01766 Eucalyptus grandis Eucgr.A01766 I
gene01998-v1.0-hybrid Fragaria vesca gene01998-v1.0-hybrid N
GLYMA06G45540 Glycine max GLYMA06G45540 N
GLYMA13G37903 Glycine max GLYMA13G37903 I
GLYMA12G32530 Glycine max GLYMA12G32530 I
GLYMA12G11490 Glycine max GLYMA12G11490 N
GLYMA12G32541 Glycine max GLYMA12G32541 N
GLYMA12G11390 Glycine max GLYMA12G11390 N
GLYMA12G11340 Glycine max GLYMA12G11340 N
GLYMA12G11330 Glycine max GLYMA12G11330 I
GLYMA06G45520 Glycine max GLYMA06G45520 N
GLYMA06G45547 Glycine max GLYMA06G45547 N
GLYMA06G45554 Glycine max GLYMA06G45554 I
Gorai.002G016800 Gossypium raimondii Gorai.002G016800 I
Gorai.005G206800 Gossypium raimondii Gorai.005G206800 N
Gorai.013G072900 Gossypium raimondii Gorai.013G072900 I
Gorai.013G071600 Gossypium raimondii Gorai.013G071600 I
Gorai.012G132400 Gossypium raimondii Gorai.012G132400 I
Lus10039735.g Linum usitatissimum Lus10039735.g I
Lus10018547.g Linum usitatissimum Lus10018547.g N
Lus10031607.g Linum usitatissimum Lus10031607.g N
Lus10033738.g Linum usitatissimum Lus10033738.g N
Lus10039734.g Linum usitatissimum Lus10039734.g I
Lus10039772.g Linum usitatissimum Lus10039772.g N
chr3.LjT47O18.40.nc Lotus japonicus chr3.LjT47O18.40.nc N
chr3.LjT47O18.60.nc Lotus japonicus chr3.LjT47O18.60.nc N
chr3.LjT47O18.70.nc Lotus japonicus chr3.LjT47O18.70.nc N
MDP0000407613 Malus domestica MDP0000407613 N
MDP0000155426 Malus domestica MDP0000155426 I
cassava26894.m1 Manihot esculenta cassava26894.m1 N
cassava6764.valid.m1 Manihot esculenta cassava6764.valid.m1 I
MTR_0008s0470 Medicago truncatula MTR_0008s0470 N
MTR_0251s0050 Medicago truncatula MTR_0251s0050 N
MTR_2g089420 Medicago truncatula MTR_2g089420 N
MTR_2g089450 Medicago truncatula MTR_2g089450 N
GSMUA_Achr11G22820_001 Musa acuminata GSMUA_Achr11G22820_001 I
POPTR_0019s14140 Populus trichocarpa POPTR_0019s14140 N
POPTR_0019s14120 Populus trichocarpa POPTR_0019s14120 I
POPTR_0013s14560 Populus trichocarpa POPTR_0013s14560 I
Pm015302 Prunus mume Pm015302 N
PRUPE_ppa026553mg Prunus persica PRUPE_ppa026553mg N
SapurV1A.0417s0150 Salix purpurea SapurV1A.0417s0150 I
SapurV1A.0417s0140 Salix purpurea SapurV1A.0417s0140 N
SapurV1A.0417s0130 Salix purpurea SapurV1A.0417s0130 I
SapurV1A.0048s0160 Salix purpurea SapurV1A.0048s0160 N
Solyc07g054980.1 Solanum lycopersicum Solyc07g054980.1 I
Solyc03g093940.1 Solanum lycopersicum Solyc03g093940.1 N
Solyc12g005640.1 Solanum lycopersicum Solyc12g005640.1 N
PGSC0003DMG400013752 Solanum tuberosum PGSC0003DMG400013752 N
PGSC0003DMG400015087 Solanum tuberosum PGSC0003DMG400015087 N
TCM_030020 Theobroma cacao TCM_030020 I
TCM_007868 Theobroma cacao TCM_007868 I
TCM_007865 Theobroma cacao TCM_007865 I
VIT_00s0203g00170 Vitis vinifera VIT_00s0203g00170 N
VIT_12s0134g00480 Vitis vinifera VIT_12s0134g00480 I
VIT_12s0134g00490 Vitis vinifera VIT_12s0134g00490 I