Thhalv10006543m.g (Eutrema salsugineum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Thhalv10006543m.g T229546_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.861 0.965
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10006543m Homeodomain 40 96

Links

Other Homeodomain family TFs
Other Eutrema salsugineum TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_01844 Aegilops tauschii F775_01844 I 0.645
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.629
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.717
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.866
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.681
RLT1 Arabidopsis thaliana AT1G28420 D 0.861
RLT2 Arabidopsis thaliana AT5G44180 I 0.664
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.865
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.681
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.650
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.645
Bo3g143570 Brassica oleracea Bo3g143570 I 0.833
Bo5g055970 Brassica oleracea Bo5g055970 I 0.865
Bo7g067190 Brassica oleracea Bo7g067190 I 0.668
Bra010869 Brassica rapa Bra010869 I 0.833
Bra032908 Brassica rapa Bra032908 I 0.864
Bra033725 Brassica rapa Bra033725 I 0.667
PK06068.1 Cannabis sativa PK06068.1 I 0.681
PK13272.1 Cannabis sativa PK13272.1 I 0.855
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.680
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.864
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.680
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.860
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.776
Ca_00337 Cicer arietinum Ca_00337 I 0.855
Ca_06343 Cicer arietinum Ca_06343 I 0.855
Ca_11272 Cicer arietinum Ca_11272 I 0.679
Cla009803 Citrullus lanatus Cla009803 I 0.860
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.669
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.860
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.860
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.669
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.860
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.833
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.669
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.681
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.651
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.860
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.659
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.855
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.855
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.855
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.669
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.844
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.844
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.645
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.647
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.688
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.848
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.836
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.859
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.637
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.836
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.637
MDP0000192108 Malus domestica MDP0000192108 I 0.860
MDP0000288192 Malus domestica MDP0000288192 I 0.848
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.860
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.674
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.860
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.855
mgf006635m Mimulus guttatus mgf006635m I 0.810
mgf006858m Mimulus guttatus mgf006858m I 0.823
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.673
OBART05G25730 Oryza barthii OBART05G25730 I 0.688
OB01G35240 Oryza brachyantha OB01G35240 I 0.647
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.688
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.647
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.688
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.647
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.688
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.647
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.647
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.688
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.647
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.647
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.688
OS01G0672201 Oryza sativa OS01G0672201 I 0.647
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.645
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.645
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.638
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.673
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.849
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.674
Pm010098 Prunus mume Pm010098 I 0.860
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.860
29983.m003128 Ricinus communis 29983.m003128 I 0.674
30190.m011307 Ricinus communis 30190.m011307 I 0.795
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.860
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.859
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.673
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.674
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.673
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.673
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.645
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.645
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.657
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.657
Si004333m.g Setaria italica Si004333m.g I 0.647
Si020949m.g Setaria italica Si020949m.g I 0.646
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.838
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.686
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.647
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.647
TCM_008214 Theobroma cacao TCM_008214 I 0.669
TCM_029805 Theobroma cacao TCM_029805 I 0.844
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.854
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.686
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.647
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.646
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.646
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.647