OFLC_0000202001 (Onchocerca flexuosa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 OFLC_0000202001 T235628_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PBX2
M08134_2.00 		Homo sapiens
NWGAKTGACABN
NVTGTCAMTCWN		 ChIP-seq
Mathelier et al.(2014)
MA1113.1 		0.853 0.947
PBX2
M09165_2.00 		Homo sapiens
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C 		0.853 0.947
Pbx2
M09199_2.00 		Mus musculus
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C 		0.853 0.947
pbx4
M02110_2.00 		Tetraodon nigroviridis
TTGAYGDV
BHCRTCAA		 PBM
Weirauch et al.(2014)
pTH6425 		0.853 0.930
Pbx3
M09205_2.00 		Mus musculus
BBBTGATTGRYNDN
NHNRYCAATCAVVV		 Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A 		0.853 0.930
Pbx1
M00513_2.00 		Mus musculus
NNDKANNNN
NNNNTMHNN		 PBM
Berger et al.(2008)
Pbx1_3203 		0.853 0.912
PBX1
M05362_2.00 		Homo sapiens
NTGATKGAYR
YRTCMATCAN		 SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX 		0.853 0.912
PBX1
M05364_2.00 		Homo sapiens
DTGMTKGRYN
NRYCMAKCAH		 SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX 		0.853 0.912
PBX1
M02685_2.00 		Homo sapiens
WWTGATTGATND
HNATCAATCAWW		 SELEX
Mathelier et al.(2014)
MA0070.1 		0.853 0.912
PBX1
M09164_2.00 		Homo sapiens
DGABTGRCRG
CYGYCAVTCH		 Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A 		0.853 0.912
PBX1
M09561_2.00 		Homo sapiens
TGABTGACAGSC
GSCTGTCAVTCA		 Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007 		0.853 0.912
PBX1
M10748_2.00 		Homo sapiens
WTKATTRDT
AHYAATMAW		 Transfac
Matys et al.(2006)
V$PBX1_01 		0.853 0.912
PBX1
M10749_2.00 		Homo sapiens
DNHTTGATTGATKDB
VHMATCAATCAADNH		 Transfac
Matys et al.(2006)
V$PBX1_02 		0.853 0.912
PBX1
M10750_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_03 		0.853 0.912
PBX1
M10751_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_05 		0.853 0.912
PBX1
M10752_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_10 		0.853 0.912
PBX1
M10753_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_Q3 		0.853 0.912
PBX1
M05363_2.00 		Homo sapiens
DTGAKKGAYG
CRTCMMTCAH		 SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX 		0.853 0.912
PBX1
M05365_2.00 		Homo sapiens
MRTCAATCMH
DKGATTGAYK		 SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX 		0.853 0.912
exd
M06487_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Mathelier et al.(2014)
MA0222.1 		0.808 0.930
exd
M06243_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611 		0.808 0.930
exd
M06244_2.00 		Drosophila melanogaster
NWRNWYNAAA
TTTNRWNYWN		 B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611 		0.808 0.930
exd
M06245_2.00 		Drosophila melanogaster
NDTGAYRW
WYRTCAHN		 B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611 		0.808 0.930
exd
M06246_2.00 		Drosophila melanogaster
NNDTGAYR
YRTCAHNN		 B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611 		0.808 0.930
PBX4
M00277_2.00 		Homo sapiens
NNDDWHDNNN
NNNHDWHHNN		 PBM
Barrera et al.(2016)
PBX4_REF 		0.802 0.895
PBX4
M10649_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX4_01 		0.802 0.895
CBG10835
M01243_2.00 		Caenorhabditis briggsae
NNTKAYDNN
NNHRTMANN		 PBM
Lambert et al.(2019)
pTH11444 		0.703 0.579
PBX4
M00276_2.00 		Homo sapiens
NYTAATTADNN
NNHTAATTARN		 PBM
Barrera et al.(2016)
PBX4_R215Q 		0.663 0.877
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OFLC_0000202001-mRNA-1 Homeodomain 190 249

Links

Other Homeodomain family TFs
Other Onchocerca flexuosa TFs

436 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_23111 Aegilops tauschii F775_23111 I
AMTR_s00007p00268280 Amborella trichopoda AMTR_s00007p00268280 I
Aquca_076_00039 Aquilegia coerulea Aquca_076_00039 I
Aquca_076_00040 Aquilegia coerulea Aquca_076_00040 I
fgenesh2_kg.1__2098__AT1G19210.1 Arabidopsis lyrata fgenesh2_kg.1__2098__AT1G19210.1 I
ORA47 Arabidopsis lyrata fgenesh2_kg.2__1761__AT1G74930.1 I
scaffold_602234.1 Arabidopsis lyrata scaffold_602234.1 I
ERF017 Arabidopsis thaliana AT1G19210 D
ERF018 Arabidopsis thaliana AT1G74930 D
ERF016 Arabidopsis thaliana AT5G21960 I
Bostr.26527s0082 Boechera stricta Bostr.26527s0082 I
Bostr.3288s0141 Boechera stricta Bostr.3288s0141 I
Bostr.7128s0526 Boechera stricta Bostr.7128s0526 I
BRADI3G37544 Brachypodium distachyon BRADI3G37544 I
Bo2g023630 Brassica oleracea Bo2g023630 I
Bo3g015600 Brassica oleracea Bo3g015600 I
Bo6g086740 Brassica oleracea Bo6g086740 I
Bo6g119120 Brassica oleracea Bo6g119120 I
Bo8g068370 Brassica oleracea Bo8g068370 I
Bo8g102870 Brassica oleracea Bo8g102870 I
Bo9g149820 Brassica oleracea Bo9g149820 I
Bra002377 Brassica rapa Bra002377 I
Bra003780 Brassica rapa Bra003780 I
Bra006599 Brassica rapa Bra006599 I
Bra015882 Brassica rapa Bra015882 I
Bra016518 Brassica rapa Bra016518 I
Bra020162 Brassica rapa Bra020162 I
Bra025719 Brassica rapa Bra025719 I
Bra031069 Brassica rapa Bra031069 I
PK18548.1 Cannabis sativa PK18548.1 I
Cagra.0402s0035 Capsella grandiflora Cagra.0402s0035 I
Cagra.1961s0079 Capsella grandiflora Cagra.1961s0079 I
Carubv10001903m.g Capsella rubella Carubv10001903m.g I
Carubv10011394m.g Capsella rubella Carubv10011394m.g I
Carubv10020965m.g Capsella rubella Carubv10020965m.g I
evm.TU.supercontig_266.5 Carica papaya evm.TU.supercontig_266.5 I
Ca_01683 Cicer arietinum Ca_01683 I
Ca_09124 Cicer arietinum Ca_09124 I
Ca_19295 Cicer arietinum Ca_19295 I
Ca_19296 Cicer arietinum Ca_19296 I
Ca_19297 Cicer arietinum Ca_19297 I
Cla007584 Citrullus lanatus Cla007584 I
Cla011318 Citrullus lanatus Cla011318 I
Cla022291 Citrullus lanatus Cla022291 I
Ciclev10009540m.g Citrus clementina Ciclev10009540m.g I
Ciclev10010348m.g Citrus clementina Ciclev10010348m.g I
orange1.1g029068m.g Citrus sinensis orange1.1g029068m.g I
Cucsa.055920 Cucumis sativus Cucsa.055920 I
Cucsa.141980 Cucumis sativus Cucsa.141980 I
Cucsa.271180 Cucumis sativus Cucsa.271180 I
Eucgr.C00780 Eucalyptus grandis Eucgr.C00780 I
Eucgr.C03175 Eucalyptus grandis Eucgr.C03175 I
Eucgr.C03297 Eucalyptus grandis Eucgr.C03297 I
Thhalv10009812m.g Eutrema salsugineum Thhalv10009812m.g I
Thhalv10015465m.g Eutrema salsugineum Thhalv10015465m.g I
Thhalv10019652m.g Eutrema salsugineum Thhalv10019652m.g I
gene12919-v1.0-hybrid Fragaria vesca gene12919-v1.0-hybrid I
GLYMA04G06095 Glycine max GLYMA04G06095 I
GLYMA06G06101 Glycine max GLYMA06G06101 I
GLYMA09G08330 Glycine max GLYMA09G08330 I
GLYMA13G17250 Glycine max GLYMA13G17250 I
GLYMA14G12505 Glycine max GLYMA14G12505 I
GLYMA15G19910 Glycine max GLYMA15G19910 I
GLYMA17G05240 Glycine max GLYMA17G05240 I
GLYMA17G33535 Glycine max GLYMA17G33535 I
Gorai.001G016800 Gossypium raimondii Gorai.001G016800 I
Gorai.001G019100 Gossypium raimondii Gorai.001G019100 I
Gorai.004G285200 Gossypium raimondii Gorai.004G285200 I
Gorai.004G285900 Gossypium raimondii Gorai.004G285900 I
Gorai.010G091100 Gossypium raimondii Gorai.010G091100 I
Gorai.013G222700 Gossypium raimondii Gorai.013G222700 I
LPERR02G28660 Leersia perrieri LPERR02G28660 I
LPERR08G14000 Leersia perrieri LPERR08G14000 I
Lus10009798.g Linum usitatissimum Lus10009798.g I
Lus10033420.g Linum usitatissimum Lus10033420.g I
Lus10034885.g Linum usitatissimum Lus10034885.g I
Lus10038082.g Linum usitatissimum Lus10038082.g I
chr1.CM0133.1010.nc Lotus japonicus chr1.CM0133.1010.nc I
chr5.CM0040.40.nd Lotus japonicus chr5.CM0040.40.nd I
chr6.CM0420.30.nd Lotus japonicus chr6.CM0420.30.nd I
MDP0000649022 Malus domestica MDP0000649022 I
MDP0000704216 Malus domestica MDP0000704216 I
cassava20547.m1 Manihot esculenta cassava20547.m1 I
cassava25057.valid.m1 Manihot esculenta cassava25057.valid.m1 I
MTR_1g014780 Medicago truncatula MTR_1g014780 I
MTR_1g014800 Medicago truncatula MTR_1g014800 I
MTR_1g014820 Medicago truncatula MTR_1g014820 I
MTR_1g014860 Medicago truncatula MTR_1g014860 I
MTR_2g043020 Medicago truncatula MTR_2g043020 I
MTR_2g043030 Medicago truncatula MTR_2g043030 I
MTR_2g043040 Medicago truncatula MTR_2g043040 I
MTR_2g043050 Medicago truncatula MTR_2g043050 I
MTR_3g105480 Medicago truncatula MTR_3g105480 I
MTR_3g105510 Medicago truncatula MTR_3g105510 I
MTR_7g028925 Medicago truncatula MTR_7g028925 I
mgf021940m Mimulus guttatus mgf021940m I
mgf024162m Mimulus guttatus mgf024162m I
mgf025452m Mimulus guttatus mgf025452m I
GSMUA_Achr5G05160_001 Musa acuminata GSMUA_Achr5G05160_001 I
GSMUA_Achr9G14360_001 Musa acuminata GSMUA_Achr9G14360_001 I
GSMUA_AchrUn_randomG02200_001 Musa acuminata GSMUA_AchrUn_randomG02200_001 I
OBART06G06190 Oryza barthii OBART06G06190 I
OBART08G16950 Oryza barthii OBART08G16950 I
OB08G24280 Oryza brachyantha OB08G24280 I
ORGLA02G0301600 Oryza glaberrima ORGLA02G0301600 I
ORGLA06G0057200 Oryza glaberrima ORGLA06G0057200 I
OGLUM02G35980 Oryza glumaepatula OGLUM02G35980 I
OGLUM06G06520 Oryza glumaepatula OGLUM06G06520 I
OGLUM08G17690 Oryza glumaepatula OGLUM08G17690 I
BGIOSGA005486 Oryza indica BGIOSGA005486 I
BGIOSGA022471 Oryza indica BGIOSGA022471 I
BGIOSGA028781 Oryza indica BGIOSGA028781 I
OMERI01G37050 Oryza meridionalis OMERI01G37050 I
OMERI03G32210 Oryza meridionalis OMERI03G32210 I
ONIVA02G36910 Oryza nivara ONIVA02G36910 I
ONIVA06G07190 Oryza nivara ONIVA06G07190 I
ONIVA08G18470 Oryza nivara ONIVA08G18470 I
OPUNC02G32160 Oryza punctata OPUNC02G32160 I
OPUNC08G14840 Oryza punctata OPUNC08G14840 I
ORUFI02G36340 Oryza rufipogon ORUFI02G36340 I
ORUFI06G06480 Oryza rufipogon ORUFI06G06480 I
ORUFI08G18850 Oryza rufipogon ORUFI08G18850 I
OS02G0781300 Oryza sativa OS02G0781300 I
OS08G0454000 Oryza sativa OS08G0454000 I
Pavir.Aa00296 Panicum virgatum Pavir.Aa00296 I
Pavir.Fa00741 Panicum virgatum Pavir.Fa00741 I
Pavir.Fb01602 Panicum virgatum Pavir.Fb01602 I
Pavir.J00593 Panicum virgatum Pavir.J00593 I
POPTR_0006s14090 Populus trichocarpa POPTR_0006s14090 I
POPTR_0006s14100 Populus trichocarpa POPTR_0006s14100 I
POPTR_0006s23480 Populus trichocarpa POPTR_0006s23480 I
POPTR_0018s08320 Populus trichocarpa POPTR_0018s08320 I
Pm027117 Prunus mume Pm027117 I
PRUPE_ppa011336mg Prunus persica PRUPE_ppa011336mg I
29739.m003647 Ricinus communis 29739.m003647 I
29739.m003716 Ricinus communis 29739.m003716 I
SapurV1A.0057s0300 Salix purpurea SapurV1A.0057s0300 I
SapurV1A.0373s0040 Salix purpurea SapurV1A.0373s0040 I
SapurV1A.0521s0050 Salix purpurea SapurV1A.0521s0050 I
SapurV1A.2229s0010 Salix purpurea SapurV1A.2229s0010 I
Si008104m.g Setaria italica Si008104m.g I
Si015027m.g Setaria italica Si015027m.g I
Si019636m.g Setaria italica Si019636m.g I
Solyc06g054630.1 Solanum lycopersicum Solyc06g054630.1 I
Solyc12g009240.1 Solanum lycopersicum Solyc12g009240.1 I
PGSC0003DMG400002899 Solanum tuberosum PGSC0003DMG400002899 I
PGSC0003DMG400030781 Solanum tuberosum PGSC0003DMG400030781 I
TCM_037415 Theobroma cacao TCM_037415 I
TCM_037486 Theobroma cacao TCM_037486 I
TRAES3BF084200010CFD_g Triticum aestivum TRAES3BF084200010CFD_g I
Traes_6AL_E6DAE246D Triticum aestivum Traes_6AL_E6DAE246D I
Traes_6DL_FA861D610 Triticum aestivum Traes_6DL_FA861D610 I
ORA47 Vitis vinifera VIT_04s0008g02230 I
VIT_11s0016g00660 Vitis vinifera VIT_11s0016g00660 I
GRMZM2G097081 Zea mays GRMZM2G097081 I
GRMZM2G163745 Zea mays GRMZM2G163745 I