CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo3g024250
(
Brassica oleracea
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
Bo3g024250
T253091_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
FLC
M06990_2.00
Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW
Dap-seq
OMalley et al.(2016)
AGL25_col_a
0.896
0.896
FLC
M06991_2.00
Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW
Dap-seq
OMalley et al.(2016)
AGL25_colamp_a
0.896
0.896
FLC
M08147_2.00
Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN
ChIP-seq
Mathelier et al.(2014)
MA0558.1
0.896
0.896
AGL27
M08145_2.00
Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK
ChIP-seq
Mathelier et al.(2014)
MA1012.1
0.729
0.729
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo3g024250.1
MADS box
10
57
RIEENSSRQVTFCKRRNGLIEKARQLSVLCDASVGLLVVSASDKLYSF
Links
Other
MADS box
family TFs
Other
Brassica oleracea
TFs
40 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_08559
Aegilops tauschii
F775_08559
I
Aquca_007_00522
Aquilegia coerulea
Aquca_007_00522
I
Aquca_010_00250
Aquilegia coerulea
Aquca_010_00250
I
Aquca_018_00034
Aquilegia coerulea
Aquca_018_00034
I
ZML1
Arabidopsis lyrata
fgenesh2_kg.3__2338__AT3G21175.1
I
TIFY1
Arabidopsis lyrata
fgenesh2_kg.7__1832__AT4G24470.2
I
ZML2
Arabidopsis lyrata
scaffold_104929.1
I
GATA24
Arabidopsis thaliana
AT3G21175
D
GATA28
Arabidopsis thaliana
AT1G51600
D
ZIM
Arabidopsis thaliana
AT4G24470
D
Bostr.26675s0048
Boechera stricta
Bostr.26675s0048
I
Bostr.7867s0254
Boechera stricta
Bostr.7867s0254
I
BRADI1G33980
Brachypodium distachyon
BRADI1G33980
I
BRADI3G03800
Brachypodium distachyon
BRADI3G03800
I
Bo1g039000
Brassica oleracea
Bo1g039000
I
Bo1g108240
Brassica oleracea
Bo1g108240
I
Bo3g181450
Brassica oleracea
Bo3g181450
I
Bo5g103560
Brassica oleracea
Bo5g103560
I
Bra013805
Brassica rapa
Bra013805
I
Bra014292
Brassica rapa
Bra014292
I
Bra023900
Brassica rapa
Bra023900
I
Bra031258
Brassica rapa
Bra031258
I
PK11000.1
Cannabis sativa
PK11000.1
I
Cagra.1757s0004
Capsella grandiflora
Cagra.1757s0004
I
Cagra.2171s0014
Capsella grandiflora
Cagra.2171s0014
I
Cagra.2346s0015
Capsella grandiflora
Cagra.2346s0015
I
Carubv10006355m.g
Capsella rubella
Carubv10006355m.g
I
Carubv10009866m.g
Capsella rubella
Carubv10009866m.g
I
Carubv10016131m.g
Capsella rubella
Carubv10016131m.g
I
evm.TU.supercontig_155.28
Carica papaya
evm.TU.supercontig_155.28
I
Ca_01471
Cicer arietinum
Ca_01471
I
Ca_17522
Cicer arietinum
Ca_17522
I
Cla013127
Citrullus lanatus
Cla013127
I
Cla015736
Citrullus lanatus
Cla015736
I
Ciclev10027306m.g
Citrus clementina
Ciclev10027306m.g
I
orange1.1g022728m.g
Citrus sinensis
orange1.1g022728m.g
I
Cucsa.218190
Cucumis sativus
Cucsa.218190
I
Cucsa.359570
Cucumis sativus
Cucsa.359570
I
Eucgr.J03166
Eucalyptus grandis
Eucgr.J03166
I
Thhalv10011695m.g
Eutrema salsugineum
Thhalv10011695m.g
I
Thhalv10020970m.g
Eutrema salsugineum
Thhalv10020970m.g
I
Thhalv10025795m.g
Eutrema salsugineum
Thhalv10025795m.g
I
GLYMA08G23720
Glycine max
GLYMA08G23720
I
Gorai.008G017800
Gossypium raimondii
Gorai.008G017800
I
MLOC_17061
Hordeum vulgare
MLOC_17061
I
MLOC_3107
Hordeum vulgare
MLOC_3107
I
LPERR02G03330
Leersia perrieri
LPERR02G03330
I
LPERR06G21800
Leersia perrieri
LPERR06G21800
I
LPERR11G14110
Leersia perrieri
LPERR11G14110
I
LjSGA_067759.1
Lotus japonicus
LjSGA_067759.1
I
cassava12169.valid.m1
Manihot esculenta
cassava12169.valid.m1
I
cassava6876.valid.m1
Manihot esculenta
cassava6876.valid.m1
I
MTR_3g100050
Medicago truncatula
MTR_3g100050
I
MTR_4g008070
Medicago truncatula
MTR_4g008070
I
mgf016112m
Mimulus guttatus
mgf016112m
I
GSMUA_Achr10G06260_001
Musa acuminata
GSMUA_Achr10G06260_001
I
GSMUA_Achr2G04520_001
Musa acuminata
GSMUA_Achr2G04520_001
I
GSMUA_Achr3G05620_001
Musa acuminata
GSMUA_Achr3G05620_001
I
GSMUA_Achr7G08720_001
Musa acuminata
GSMUA_Achr7G08720_001
I
GSMUA_Achr9G13870_001
Musa acuminata
GSMUA_Achr9G13870_001
I
OBART02G03780
Oryza barthii
OBART02G03780
I
OBART06G26250
Oryza barthii
OBART06G26250
I
OB02G13220
Oryza brachyantha
OB02G13220
I
OB06G33840
Oryza brachyantha
OB06G33840
I
ORGLA02G0035000
Oryza glaberrima
ORGLA02G0035000
I
ORGLA06G0219100
Oryza glaberrima
ORGLA06G0219100
I
OGLUM02G03560
Oryza glumaepatula
OGLUM02G03560
I
OGLUM06G27650
Oryza glumaepatula
OGLUM06G27650
I
BGIOSGA007539
Oryza indica
BGIOSGA007539
I
BGIOSGA020596
Oryza indica
BGIOSGA020596
I
OLONG_015069
Oryza longistaminata
OLONG_015069
I
OMERI02G04610
Oryza meridionalis
OMERI02G04610
I
OMERI06G26410
Oryza meridionalis
OMERI06G26410
I
ONIVA02G03810
Oryza nivara
ONIVA02G03810
I
ONIVA06G28780
Oryza nivara
ONIVA06G28780
I
OPUNC02G02970
Oryza punctata
OPUNC02G02970
I
OPUNC06G23830
Oryza punctata
OPUNC06G23830
I
ORUFI02G03830
Oryza rufipogon
ORUFI02G03830
I
ORUFI06G28170
Oryza rufipogon
ORUFI06G28170
I
GATA17
Oryza sativa
OS02G0148500
I
OS06G0698900
Oryza sativa
OS06G0698900
D
Pavir.Da00166
Panicum virgatum
Pavir.Da00166
I
Pavir.Db00254
Panicum virgatum
Pavir.Db00254
I
PDK_20s1340921g001
Phoenix dactylifera
PDK_20s1340921g001
I
e_gw1.226.30.1
Physcomitrella patens
e_gw1.226.30.1
I
fgenesh1_pm.scaffold_69000012
Physcomitrella patens
fgenesh1_pm.scaffold_69000012
I
fgenesh2_pm.scaffold_111000001
Physcomitrella patens
fgenesh2_pm.scaffold_111000001
I
gw1.68.123.1
Physcomitrella patens
gw1.68.123.1
I
POPTR_0007s03130
Populus trichocarpa
POPTR_0007s03130
I
POPTR_0010s25810
Populus trichocarpa
POPTR_0010s25810
I
POPTR_0017s06980
Populus trichocarpa
POPTR_0017s06980
I
Pm013048
Prunus mume
Pm013048
I
Pm022163
Prunus mume
Pm022163
I
PRUPE_ppa009401mg
Prunus persica
PRUPE_ppa009401mg
I
PRUPE_ppa009709mg
Prunus persica
PRUPE_ppa009709mg
I
29838.m001724
Ricinus communis
29838.m001724
I
SapurV1A.0036s1170
Salix purpurea
SapurV1A.0036s1170
I
SapurV1A.0187s0150
Salix purpurea
SapurV1A.0187s0150
I
SELMODRAFT_177195
Selaginella moellendorffii
SELMODRAFT_177195
I
SELMODRAFT_423855
Selaginella moellendorffii
SELMODRAFT_423855
I
Si006750m.g
Setaria italica
Si006750m.g
I
Sb10g028750
Sorghum bicolor
Sb10g028750
I
TCM_007360
Theobroma cacao
TCM_007360
I
TCM_027858
Theobroma cacao
TCM_027858
I
Traes_6AS_4106E8E28
Triticum aestivum
Traes_6AS_4106E8E28
I
Traes_6BS_AB5909D02
Triticum aestivum
Traes_6BS_AB5909D02
I
Traes_6DS_6268D31AE
Triticum aestivum
Traes_6DS_6268D31AE
I
Traes_7AL_EA6F4FFDE
Triticum aestivum
Traes_7AL_EA6F4FFDE
I
Traes_7DL_A5ECEDA95
Triticum aestivum
Traes_7DL_A5ECEDA95
I
TRIUR3_11107
Triticum urartu
TRIUR3_11107
I
TRIUR3_32095
Triticum urartu
TRIUR3_32095
I
VIT_09s0054g00440
Vitis vinifera
VIT_09s0054g00440
I
GRMZM2G058479
Zea mays
GRMZM2G058479
I
GRMZM2G080509
Zea mays
GRMZM2G080509
I