PI (Arabidopsis lyrata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 fgenesh2_kg.6__2063__AT5G20240.1 T254034_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PI
M08148_2.00 		Arabidopsis thaliana
MCMAAARWRGAAAR
YTTTCYWYTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA0559.1 		0.979 0.979
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.771 0.771
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.750 0.750
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.708 0.708
FBP1_PETHY
M10996_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP1_01 		0.708 0.708
Q9AR49_MAIZE
M10980_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M29_01 		0.708 0.708
MAD14_ORYSJ
M10960_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_01 		0.708 0.708
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.708 0.708
Q9ZRA5_MALDO
M11030_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_04 		0.708 0.708
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.6__2063__AT5G20240.1 MADS box 10 57

Links

Other MADS box family TFs
Other Arabidopsis lyrata TFs

182 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_31247 Aegilops tauschii F775_31247 I 0.708
Aquca_002_00911 Aquilegia coerulea Aquca_002_00911 I 0.708
Aquca_032_00047 Aquilegia coerulea Aquca_032_00047 I 0.750
AGL6 Arabidopsis lyrata fgenesh2_kg.4__2761__AT2G45650.1 I 0.708
AGL8 Arabidopsis lyrata scaffold_802730.1 I 0.708
AGL6 Arabidopsis thaliana AT2G45650 D 0.708
AGL18 Arabidopsis thaliana AT3G57390 I 0.708
PI Arabidopsis thaliana AT5G20240 D 0.979
AGL8 Arabidopsis thaliana AT5G60910 I 0.708
Bostr.25993s0209 Boechera stricta Bostr.25993s0209 I 0.708
Bostr.26527s0175 Boechera stricta Bostr.26527s0175 I 0.979
Bostr.26833s0146 Boechera stricta Bostr.26833s0146 I 0.708
BRADI1G21980 Brachypodium distachyon BRADI1G21980 I 0.708
BRADI3G51800 Brachypodium distachyon BRADI3G51800 I 0.708
Bo2g020730 Brassica oleracea Bo2g020730 I 0.958
Bo3g010390 Brassica oleracea Bo3g010390 I 0.979
Bo3g014100 Brassica oleracea Bo3g014100 I 0.958
Bo6g072840 Brassica oleracea Bo6g072840 I 0.708
Bo7g098190 Brassica oleracea Bo7g098190 I 0.708
Bo9g152080 Brassica oleracea Bo9g152080 I 0.938
Bra002285 Brassica rapa Bra002285 I 0.938
Bra003278 Brassica rapa Bra003278 I 0.708
Bra006549 Brassica rapa Bra006549 I 0.958
Bra012997 Brassica rapa Bra012997 I 0.708
Bra020093 Brassica rapa Bra020093 I 0.958
Bra029347 Brassica rapa Bra029347 I 0.708
PK27158.1 Cannabis sativa PK27158.1 I 0.714
Cagra.0050s0135 Capsella grandiflora Cagra.0050s0135 I 0.708
Cagra.0179s0008 Capsella grandiflora Cagra.0179s0008 I 0.979
Cagra.0578s0070 Capsella grandiflora Cagra.0578s0070 I 0.708
Carubv10001962m.g Capsella rubella Carubv10001962m.g I 0.979
Carubv10017886m.g Capsella rubella Carubv10017886m.g I 0.708
Carubv10023910m.g Capsella rubella Carubv10023910m.g I 0.708
Carubv10027017m.g Capsella rubella Carubv10027017m.g I 0.708
evm.TU.supercontig_125.55 Carica papaya evm.TU.supercontig_125.55 I 0.708
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.771
evm.TU.supercontig_414.3 Carica papaya evm.TU.supercontig_414.3 I 0.708
Ca_13111 Cicer arietinum Ca_13111 I 0.771
Ca_24649 Cicer arietinum Ca_24649 I 0.708
Cla023547 Citrullus lanatus Cla023547 I 0.750
Ciclev10002410m.g Citrus clementina Ciclev10002410m.g I 0.708
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.792
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.812
Ciclev10021911m.g Citrus clementina Ciclev10021911m.g I 0.708
orange1.1g037149m.g Citrus sinensis orange1.1g037149m.g I 0.708
orange1.1g040046m.g Citrus sinensis orange1.1g040046m.g I 0.708
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.812
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.792
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.750
Eucgr.B00633 Eucalyptus grandis Eucgr.B00633 I 0.708
Eucgr.B00634 Eucalyptus grandis Eucgr.B00634 I 0.708
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.750
Eucgr.E01007 Eucalyptus grandis Eucgr.E01007 I 0.729
Thhalv10004769m.g Eutrema salsugineum Thhalv10004769m.g I 0.708
Thhalv10014683m.g Eutrema salsugineum Thhalv10014683m.g I 0.979
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.729
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.812
gene19428-v1.0-hybrid Fragaria vesca gene19428-v1.0-hybrid I 0.708
GLYMA02G13420 Glycine max GLYMA02G13420 I 0.708
GLYMA03G02191 Glycine max GLYMA03G02191 I 0.708
GLYMA03G02210 Glycine max GLYMA03G02210 I 0.708
GLYMA05G07380 Glycine max GLYMA05G07380 I 0.708
GLYMA07G08890 Glycine max GLYMA07G08890 I 0.708
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.750
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.750
GLYMA16G32540 Glycine max GLYMA16G32540 I 0.708
GLYMA17G08890 Glycine max GLYMA17G08890 I 0.708
GLYMA18G45761 Glycine max GLYMA18G45761 I 0.708
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.750
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.792
Gorai.007G093700 Gossypium raimondii Gorai.007G093700 I 0.708
MLOC_52944 Hordeum vulgare MLOC_52944 I 0.708
LPERR02G22830 Leersia perrieri LPERR02G22830 I 0.708
LPERR04G18560 Leersia perrieri LPERR04G18560 I 0.708
Lus10017871.g Linum usitatissimum Lus10017871.g I 0.708
Lus10029719.g Linum usitatissimum Lus10029719.g I 0.792
Lus10034662.g Linum usitatissimum Lus10034662.g I 0.708
Lus10042749.g Linum usitatissimum Lus10042749.g I 0.792
CM0547.50.nc Lotus japonicus CM0547.50.nc I 0.708
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.750
MDP0000289836 Malus domestica MDP0000289836 I 0.708
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.771
Q9ZRA5_MALDO Malus domestica Q9ZRA5_MALDO D 0.708
cassava28636.m1 Manihot esculenta cassava28636.m1 I 0.708
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.750
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.792
cassava46263.m1 Manihot esculenta cassava46263.m1 I 0.708
MTR_4g109830 Medicago truncatula MTR_4g109830 I 0.708
MTR_5g046790 Medicago truncatula MTR_5g046790 I 0.750
MTR_6g464720 Medicago truncatula MTR_6g464720 I 0.708
MTR_8g033270 Medicago truncatula MTR_8g033270 I 0.708
mgf001713m Mimulus guttatus mgf001713m I 0.708
mgf003143m Mimulus guttatus mgf003143m I 0.708
mgf006158m Mimulus guttatus mgf006158m I 0.708
mgf007278m Mimulus guttatus mgf007278m I 0.708
mgf008207m Mimulus guttatus mgf008207m I 0.708
GSMUA_Achr10G18600_001 Musa acuminata GSMUA_Achr10G18600_001 I 0.708
GSMUA_Achr11G07760_001 Musa acuminata GSMUA_Achr11G07760_001 I 0.708
GSMUA_Achr11G21480_001 Musa acuminata GSMUA_Achr11G21480_001 I 0.708
GSMUA_Achr1G00750_001 Musa acuminata GSMUA_Achr1G00750_001 I 0.708
GSMUA_Achr2G10250_001 Musa acuminata GSMUA_Achr2G10250_001 I 0.708
GSMUA_Achr4G23540_001 Musa acuminata GSMUA_Achr4G23540_001 I 0.708
GSMUA_Achr4G30120_001 Musa acuminata GSMUA_Achr4G30120_001 I 0.708
GSMUA_Achr6G00050_001 Musa acuminata GSMUA_Achr6G00050_001 I 0.708
GSMUA_Achr7G00460_001 Musa acuminata GSMUA_Achr7G00460_001 I 0.708
OBART02G28030 Oryza barthii OBART02G28030 I 0.708
OBART03G34520 Oryza barthii OBART03G34520 I 0.708
OBART04G22790 Oryza barthii OBART04G22790 I 0.708
OB02G35340 Oryza brachyantha OB02G35340 I 0.708
OB03G41490 Oryza brachyantha OB03G41490 I 0.708
OB04G29660 Oryza brachyantha OB04G29660 I 0.708
ORGLA02G0240800 Oryza glaberrima ORGLA02G0240800 I 0.708
ORGLA03G0314900 Oryza glaberrima ORGLA03G0314900 I 0.708
ORGLA04G0197900 Oryza glaberrima ORGLA04G0197900 I 0.708
OGLUM02G28590 Oryza glumaepatula OGLUM02G28590 I 0.708
OGLUM04G22680 Oryza glumaepatula OGLUM04G22680 I 0.708
BGIOSGA008820 Oryza indica BGIOSGA008820 I 0.708
BGIOSGA009798 Oryza indica BGIOSGA009798 I 0.708
BGIOSGA016980 Oryza indica BGIOSGA016980 I 0.708
OLONG_003266 Oryza longistaminata OLONG_003266 I 0.708
OLONG_010503 Oryza longistaminata OLONG_010503 I 0.708
OMERI02G27210 Oryza meridionalis OMERI02G27210 I 0.708
OMERI03G31620 Oryza meridionalis OMERI03G31620 I 0.708
OMERI04G19060 Oryza meridionalis OMERI04G19060 I 0.708
ONIVA02G31130 Oryza nivara ONIVA02G31130 I 0.708
ONIVA03G35980 Oryza nivara ONIVA03G35980 I 0.708
ONIVA04G21940 Oryza nivara ONIVA04G21940 I 0.708
OPUNC02G25740 Oryza punctata OPUNC02G25740 I 0.708
OPUNC03G31590 Oryza punctata OPUNC03G31590 I 0.708
OPUNC04G20380 Oryza punctata OPUNC04G20380 I 0.708
OPUNC09G14150 Oryza punctata OPUNC09G14150 I 0.727
ORUFI02G29550 Oryza rufipogon ORUFI02G29550 I 0.708
ORUFI03G35930 Oryza rufipogon ORUFI03G35930 I 0.708
ORUFI04G24470 Oryza rufipogon ORUFI04G24470 I 0.708
MAD14_ORYSJ Oryza sativa MAD14_ORYSJ D 0.708
MAD17_ORYSJ Oryza sativa MAD17_ORYSJ D 0.708
MADS6 Oryza sativa OS02G0682200 D 0.708
OS03G0752800 Oryza sativa OS03G0752800 I 0.708
OS04G0580700 Oryza sativa OS04G0580700 I 0.708
Pavir.Aa00924 Panicum virgatum Pavir.Aa00924 I 0.708
Pavir.Ab02707 Panicum virgatum Pavir.Ab02707 I 0.708
Pavir.Ia00530 Panicum virgatum Pavir.Ia00530 I 0.708
Pavir.J00016 Panicum virgatum Pavir.J00016 I 0.708
Pavir.J03093 Panicum virgatum Pavir.J03093 I 0.708
Pavir.J33965 Panicum virgatum Pavir.J33965 I 0.708
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.708
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.750
PDK_20s1538871g001 Phoenix dactylifera PDK_20s1538871g001 I 0.708
POPTR_0002s07920 Populus trichocarpa POPTR_0002s07920 I 0.708
POPTR_0005s20480 Populus trichocarpa POPTR_0005s20480 I 0.729
Pm004718 Prunus mume Pm004718 I 0.792
Pm018087 Prunus mume Pm018087 I 0.708
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.792
PRUPE_ppa019932mg Prunus persica PRUPE_ppa019932mg I 0.708
29648.m001978 Ricinus communis 29648.m001978 I 0.771
30174.m008934 Ricinus communis 30174.m008934 I 0.708
SapurV1A.0578s0120 Salix purpurea SapurV1A.0578s0120 I 0.708
SELMODRAFT_449545 Selaginella moellendorffii SELMODRAFT_449545 I 0.708
SELMODRAFT_449594 Selaginella moellendorffii SELMODRAFT_449594 I 0.708
SELMODRAFT_450804 Selaginella moellendorffii SELMODRAFT_450804 I 0.708
SELMODRAFT_450837 Selaginella moellendorffii SELMODRAFT_450837 I 0.708
Si018160m.g Setaria italica Si018160m.g I 0.708
Si023214m.g Setaria italica Si023214m.g I 0.708
Si030896m.g Setaria italica Si030896m.g I 0.708
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.792
Sb01g007790 Sorghum bicolor Sb01g007790 I 0.708
Sb02g038780 Sorghum bicolor Sb02g038780 I 0.708
Sb04g031750 Sorghum bicolor Sb04g031750 I 0.708
TCM_005458 Theobroma cacao TCM_005458 I 0.708
TCM_035212 Theobroma cacao TCM_035212 I 0.771
Traes_6AL_1F7DAC5FA Triticum aestivum Traes_6AL_1F7DAC5FA I 0.708
Traes_6BL_7C6B17284 Triticum aestivum Traes_6BL_7C6B17284 I 0.708
Traes_6DL_5B1D4DBF5 Triticum aestivum Traes_6DL_5B1D4DBF5 I 0.708
TRIUR3_22246 Triticum urartu TRIUR3_22246 I 0.708
VIT_15s0048g01270 Vitis vinifera VIT_15s0048g01270 I 0.708
PI Vitis vinifera VIT_18s0001g01760 I 0.750
GRMZM2G032339 Zea mays GRMZM2G032339 I 0.708
GRMZM2G147716 Zea mays GRMZM2G147716 I 0.708
GRMZM2G152862 Zea mays GRMZM2G152862 I 0.708
GRMZM2G160565 Zea mays GRMZM2G160565 I 0.708
GRMZM2G553379 Zea mays GRMZM2G553379 I 0.708
Q9AR49_MAIZE Zea mays Q9AR49_MAIZE D 0.708