Pavir.Ib03850 (Panicum virgatum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pavir.Ib03850 T258931_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib03850.1.p MADS box 10 55

Links

Other MADS box family TFs
Other Panicum virgatum TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.711
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.733
evm.TU.supercontig_1750.1 Carica papaya evm.TU.supercontig_1750.1 I 0.727
GSMUA_Achr2G18400_001 Musa acuminata GSMUA_Achr2G18400_001 N 0.729
GSMUA_Achr2G18410_001 Musa acuminata GSMUA_Achr2G18410_001 N 0.710
GSMUA_Achr3G08500_001 Musa acuminata GSMUA_Achr3G08500_001 N 0.822
OBART01G12050 Oryza barthii OBART01G12050 N 0.771
OB01G21750 Oryza brachyantha OB01G21750 N 0.745
OB03G33030 Oryza brachyantha OB03G33030 N 0.711
ORGLA01G0101700 Oryza glaberrima ORGLA01G0101700 N 0.771
ORGLA03G0221500 Oryza glaberrima ORGLA03G0221500 N 0.771
OGLUM01G13490 Oryza glumaepatula OGLUM01G13490 N 0.771
OGLUM03G24530 Oryza glumaepatula OGLUM03G24530 N 0.771
BGIOSGA003304 Oryza indica BGIOSGA003304 N 0.771
ONIVA01G14280 Oryza nivara ONIVA01G14280 N 0.771
OPUNC01G11730 Oryza punctata OPUNC01G11730 N 0.771
ORUFI01G13020 Oryza rufipogon ORUFI01G13020 N 0.771
Pavir.J14267 Panicum virgatum Pavir.J14267 N 0.870
Pavir.Eb00487 Panicum virgatum Pavir.Eb00487 N 0.711
Pavir.Ab01824 Panicum virgatum Pavir.Ab01824 N 0.739
Pavir.J40580 Panicum virgatum Pavir.J40580 N 0.771
Pavir.Aa01999 Panicum virgatum Pavir.Aa01999 N 0.783
PDK_20s1688321g001 Phoenix dactylifera PDK_20s1688321g001 N 0.705
Si019470m.g Setaria italica Si019470m.g N 0.857
Si004188m.g Setaria italica Si004188m.g N 0.711
TRAES3BF073700150CFD_g Triticum aestivum TRAES3BF073700150CFD_g N 0.711
GRMZM5G853066 Zea mays GRMZM5G853066 N 0.896
GRMZM5G839969 Zea mays GRMZM5G839969 N 0.933