CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc09g010820.2
(
Solanum lycopersicum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Solyc09g010820.2
T280229_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB3R5
M07116_2.00
Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN
Dap-seq
OMalley et al.(2016)
MYB3R5_col_a
0.739
0.836
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc09g010820.2.1
Myb
56
102
KGGWTPEEDDTLKQAVSVYRGKCWKKIAEFFPDRSEVQCLHRWQKVI
Solyc09g010820.2.1
Myb
108
154
KGPWTREEDDKIIELVAKYGPIKWSVIAKSLTGRIGKQCRERWHNHL
Solyc09g010820.2.1
Myb
160
205
KDAWTLEEERALIDAHRIHGNKWAEIAKVLPGRTDNGIKNHWNSSL
Links
Other
Myb/SANT
family TFs
Other
Solanum lycopersicum
TFs
86 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMTR_s00012p00208260
Amborella trichopoda
AMTR_s00012p00208260
I
0.671
Aquca_003_00045
Aquilegia coerulea
Aquca_003_00045
I
0.780
fgenesh1_pg.C_scaffold_3000839
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_3000839
I
0.746
ATMYB3R5
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6000124
I
0.739
MYB3R-3
Arabidopsis thaliana
AT3G09370
I
0.740
MYB3R5
Arabidopsis thaliana
AT5G02320
D
0.739
Bostr.22252s0130
Boechera stricta
Bostr.22252s0130
I
0.744
Bostr.6251s0040
Boechera stricta
Bostr.6251s0040
I
0.757
BRADI2G54640
Brachypodium distachyon
BRADI2G54640
I
0.733
Bo1g144510
Brassica oleracea
Bo1g144510
I
0.747
Bo5g139340
Brassica oleracea
Bo5g139340
I
0.705
Bo9g184660
Brassica oleracea
Bo9g184660
I
0.700
Bra009597
Brassica rapa
Bra009597
I
0.710
Bra029762
Brassica rapa
Bra029762
I
0.710
Bra034067
Brassica rapa
Bra034067
I
0.747
PK11664.1
Cannabis sativa
PK11664.1
I
0.713
Cagra.0487s0012
Capsella grandiflora
Cagra.0487s0012
I
0.777
Cagra.2515s0028
Capsella grandiflora
Cagra.2515s0028
I
0.755
Carubv10000643m.g
Capsella rubella
Carubv10000643m.g
I
0.777
Carubv10013377m.g
Capsella rubella
Carubv10013377m.g
I
0.755
evm.TU.supercontig_228.17
Carica papaya
evm.TU.supercontig_228.17
I
0.751
Ca_21127
Cicer arietinum
Ca_21127
I
0.675
Ca_14925
Cicer arietinum
Ca_14925
I
0.670
Cla023357
Citrullus lanatus
Cla023357
I
0.665
Cla018173
Citrullus lanatus
Cla018173
I
0.727
Ciclev10011452m.g
Citrus clementina
Ciclev10011452m.g
I
0.789
Ciclev10007316m.g
Citrus clementina
Ciclev10007316m.g
I
0.668
orange1.1g009402m.g
Citrus sinensis
orange1.1g009402m.g
I
0.789
Cucsa.311420
Cucumis sativus
Cucsa.311420
I
0.665
Cucsa.175460
Cucumis sativus
Cucsa.175460
I
0.749
Eucgr.K03133
Eucalyptus grandis
Eucgr.K03133
I
0.765
Thhalv10013211m.g
Eutrema salsugineum
Thhalv10013211m.g
I
0.774
Thhalv10020579m.g
Eutrema salsugineum
Thhalv10020579m.g
I
0.755
gene08793-v1.0-hybrid
Fragaria vesca
gene08793-v1.0-hybrid
I
0.671
gene18416-v1.0-hybrid
Fragaria vesca
gene18416-v1.0-hybrid
I
0.731
GLYMA18G39740
Glycine max
GLYMA18G39740
I
0.768
GLYMA07G15820
Glycine max
GLYMA07G15820
I
0.785
GLYMA03G19470
Glycine max
GLYMA03G19470
I
0.702
Gorai.006G172800
Gossypium raimondii
Gorai.006G172800
I
0.783
Gorai.001G249400
Gossypium raimondii
Gorai.001G249400
I
0.760
LPERR01G31650
Leersia perrieri
LPERR01G31650
I
0.724
Lus10025351.g
Linum usitatissimum
Lus10025351.g
I
0.757
Lus10024394.g
Linum usitatissimum
Lus10024394.g
I
0.757
chr1.CM0147.520.nd
Lotus japonicus
chr1.CM0147.520.nd
I
0.771
MDP0000219581
Malus domestica
MDP0000219581
I
0.741
cassava12645.valid.m1
Manihot esculenta
cassava12645.valid.m1
I
0.745
MTR_3g110028
Medicago truncatula
MTR_3g110028
I
0.666
MTR_7g461410
Medicago truncatula
MTR_7g461410
I
0.765
MTR_7g061330
Medicago truncatula
MTR_7g061330
I
0.765
MTR_1g026870
Medicago truncatula
MTR_1g026870
I
0.692
mgf019610m
Mimulus guttatus
mgf019610m
I
0.732
GSMUA_Achr7G10520_001
Musa acuminata
GSMUA_Achr7G10520_001
I
0.730
GSMUA_Achr6G05030_001
Musa acuminata
GSMUA_Achr6G05030_001
I
0.746
GSMUA_Achr10G26610_001
Musa acuminata
GSMUA_Achr10G26610_001
I
0.748
OBART05G19200
Oryza barthii
OBART05G19200
I
0.674
OB01G45570
Oryza brachyantha
OB01G45570
I
0.694
ORGLA01G0306500
Oryza glaberrima
ORGLA01G0306500
I
0.744
OGLUM01G40780
Oryza glumaepatula
OGLUM01G40780
I
0.744
BGIOSGA017917
Oryza indica
BGIOSGA017917
I
0.674
OLONG_011208
Oryza longistaminata
OLONG_011208
I
0.689
ONIVA05G20060
Oryza nivara
ONIVA05G20060
I
0.674
OPUNC05G16800
Oryza punctata
OPUNC05G16800
I
0.682
ORUFI05G20390
Oryza rufipogon
ORUFI05G20390
I
0.674
MYB3R-2
Oryza sativa
OS01G0841500
I
0.744
Pavir.Ea03349
Panicum virgatum
Pavir.Ea03349
I
0.754
Pavir.Eb03676
Panicum virgatum
Pavir.Eb03676
I
0.743
PDK_20s1314361g001
Phoenix dactylifera
PDK_20s1314361g001
N
0.663
POPTR_0006s08570
Populus trichocarpa
POPTR_0006s08570
I
0.783
Pm002704
Prunus mume
Pm002704
I
0.791
PRUPE_ppa003208mg
Prunus persica
PRUPE_ppa003208mg
I
0.791
29846.m000184
Ricinus communis
29846.m000184
I
0.778
SapurV1A.0001s1810
Salix purpurea
SapurV1A.0001s1810
I
0.785
Si000842m.g
Setaria italica
Si000842m.g
I
0.743
Solyc08g068320.2
Solanum lycopersicum
Solyc08g068320.2
I
0.675
PGSC0003DMG400008908
Solanum tuberosum
PGSC0003DMG400008908
I
0.909
Sb03g039470
Sorghum bicolor
Sb03g039470
I
0.737
TCM_021936
Theobroma cacao
TCM_021936
I
0.771
Traes_1BL_C25B5DDB4
Triticum aestivum
Traes_1BL_C25B5DDB4
I
0.702
Traes_1DL_B26A733D4
Triticum aestivum
Traes_1DL_B26A733D4
I
0.688
Traes_3AL_386795528
Triticum aestivum
Traes_3AL_386795528
I
0.742
TRAES3BF104600030CFD_g
Triticum aestivum
TRAES3BF104600030CFD_g
I
0.742
Traes_3DL_6BBC889A1
Triticum aestivum
Traes_3DL_6BBC889A1
I
0.742
TRIUR3_29290
Triticum urartu
TRIUR3_29290
I
0.697
VIT_08s0007g00360
Vitis vinifera
VIT_08s0007g00360
I
0.775
VIT_11s0016g03750
Vitis vinifera
VIT_11s0016g03750
I
0.661
GRMZM2G081919
Zea mays
GRMZM2G081919
I
0.732