Pavir.J07395 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J07395 T289340_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.730 0.835
MYB3R4
M07125_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R4_col_a 		0.713 0.806
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.699 0.799
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.699 0.799
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.689 0.813
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J07395.1.p Myb 48 94
Pavir.J07395.1.p Myb 100 146
Pavir.J07395.1.p Myb 152 196
Pavir.J07395.2.p Myb 48 94
Pavir.J07395.2.p Myb 100 146
Pavir.J07395.2.p Myb 152 196

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

101 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_05724 Aegilops tauschii F775_05724 I 0.799
F775_10106 Aegilops tauschii F775_10106 I 0.674
AMTR_s00009p00263240 Amborella trichopoda AMTR_s00009p00263240 I 0.665
AMTR_s00109p00061950 Amborella trichopoda AMTR_s00109p00061950 I 0.681
Aquca_001_00435 Aquilegia coerulea Aquca_001_00435 I 0.741
Aquca_013_00366 Aquilegia coerulea Aquca_013_00366 I 0.670
MYB3R-4 Arabidopsis lyrata fgenesh2_kg.6__1121__AT5G11510.1 I 0.713
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.699
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.699
MYB3R4 Arabidopsis thaliana AT5G11510 D 0.713
Bostr.20055s0087 Boechera stricta Bostr.20055s0087 I 0.713
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.699
BRADI2G07677 Brachypodium distachyon BRADI2G07677 N 0.664
BRADI2G31887 Brachypodium distachyon BRADI2G31887 I 0.794
Bo1g010040 Brassica oleracea Bo1g010040 I 0.694
Bo3g007070 Brassica oleracea Bo3g007070 I 0.717
Bo3g171130 Brassica oleracea Bo3g171130 I 0.694
Bo3g179620 Brassica oleracea Bo3g179620 I 0.717
Bo7g115810 Brassica oleracea Bo7g115810 I 0.719
Bo9g171130 Brassica oleracea Bo9g171130 I 0.711
Bra006102 Brassica rapa Bra006102 I 0.705
Bra008956 Brassica rapa Bra008956 I 0.711
Bra011376 Brassica rapa Bra011376 I 0.694
Bra034531 Brassica rapa Bra034531 I 0.694
Bra037045 Brassica rapa Bra037045 I 0.690
PK12011.1 Cannabis sativa PK12011.1 D 0.689
PK22174.1 Cannabis sativa PK22174.1 I 0.702
Cagra.7526s0003 Capsella grandiflora Cagra.7526s0003 I 0.696
Carubv10000155m.g Capsella rubella Carubv10000155m.g I 0.696
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.760
Ca_01884 Cicer arietinum Ca_01884 I 0.710
Ca_14925 Cicer arietinum Ca_14925 I 0.714
Cla022565 Citrullus lanatus Cla022565 I 0.758
Cla023357 Citrullus lanatus Cla023357 I 0.737
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.749
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.758
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.737
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.758
Thhalv10012583m.g Eutrema salsugineum Thhalv10012583m.g I 0.705
Thhalv10024320m.g Eutrema salsugineum Thhalv10024320m.g I 0.703
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.752
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.706
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.706
GLYMA14G21523 Glycine max GLYMA14G21523 I 0.726
GLYMA17G26240 Glycine max GLYMA17G26240 I 0.723
Gorai.001G028200 Gossypium raimondii Gorai.001G028200 I 0.702
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.662
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.741
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.739
MLOC_10556 Hordeum vulgare MLOC_10556 I 0.790
Lus10022136.g Linum usitatissimum Lus10022136.g I 0.770
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.747
MDP0000179225 Malus domestica MDP0000179225 I 0.744
MDP0000295807 Malus domestica MDP0000295807 I 0.724
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.725
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.727
mgf006384m Mimulus guttatus mgf006384m I 0.661
mgf008601m Mimulus guttatus mgf008601m I 0.739
GSMUA_Achr10G14840_001 Musa acuminata GSMUA_Achr10G14840_001 I 0.760
GSMUA_Achr2G19890_001 Musa acuminata GSMUA_Achr2G19890_001 I 0.792
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.730
OBART01G08110 Oryza barthii OBART01G08110 I 0.799
OB01G18340 Oryza brachyantha OB01G18340 I 0.822
OB12G16480 Oryza brachyantha OB12G16480 I 0.826
ORGLA01G0073200 Oryza glaberrima ORGLA01G0073200 I 0.780
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.666
ORGLA12G0066300 Oryza glaberrima ORGLA12G0066300 I 0.826
OGLUM01G09290 Oryza glumaepatula OGLUM01G09290 I 0.799
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.666
OLONG_011886 Oryza longistaminata OLONG_011886 I 0.799
OMERI01G08160 Oryza meridionalis OMERI01G08160 I 0.765
ONIVA01G10670 Oryza nivara ONIVA01G10670 I 0.799
OPUNC01G07980 Oryza punctata OPUNC01G07980 I 0.803
OPUNC01G08000 Oryza punctata OPUNC01G08000 I 0.803
OPUNC12G06560 Oryza punctata OPUNC12G06560 N 0.680
MYB3R-2 Oryza sativa OS01G0841500 I 0.666
OS12G0238000 Oryza sativa OS12G0238000 I 0.826
Pavir.Ea00087 Panicum virgatum Pavir.Ea00087 I 0.820
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I 0.661
Pavir.Eb00149 Panicum virgatum Pavir.Eb00149 I 0.820
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.661
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.760
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.760
Pm005124 Prunus mume Pm005124 I 0.745
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.754
29794.m003447 Ricinus communis 29794.m003447 I 0.731
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.758
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.731
Si000842m.g Setaria italica Si000842m.g I 0.661
Si021484m.g Setaria italica Si021484m.g I 0.677
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.721
Sb09g007370 Sorghum bicolor Sb09g007370 N 0.752
TCM_047091 Theobroma cacao TCM_047091 I 0.744
Traes_1AS_61D017632 Triticum aestivum Traes_1AS_61D017632 I 0.802
Traes_1BS_403DBC53C Triticum aestivum Traes_1BS_403DBC53C I 0.798
Traes_3AS_09025DA2E Triticum aestivum Traes_3AS_09025DA2E I 0.818
TRAES3BF049800070CFD_g Triticum aestivum TRAES3BF049800070CFD_g I 0.818
TRIUR3_24658 Triticum urartu TRIUR3_24658 I 0.790
VIT_04s0008g03780 Vitis vinifera VIT_04s0008g03780 I 0.715
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.753