CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0016s07690
(
Populus trichocarpa
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
POPTR_0016s07690
T295342_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0016s07690.1
NAC/NAM
4
138
PPGYRFFPTEEELISFYLHHKLDGGSEDLNQVINQIIPVRDIYEHDPWDLPQFSGGLHHIKDPEQWFFFIPRQESEARGGRPKRLTNTGYWKATGSPGSVFSNNRSIGLKRTMVFYSGRAPNGRKTEWKMNEYKA
Links
Other
NAC/NAM
family TFs
Other
Populus trichocarpa
TFs
115 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
bHLH34
Arabidopsis lyrata
fgenesh2_kg.3__2536__AT3G23210.1
I
bHLH104
Arabidopsis lyrata
fgenesh2_kg.7__2895__AT4G14410.2
I
BHLH34
Arabidopsis thaliana
AT3G23210
D
BHLH104
Arabidopsis thaliana
AT4G14410
D
Bostr.0597s0053
Boechera stricta
Bostr.0597s0053
I
Bra041033
Brassica rapa
Bra041033
I
Cagra.1718s0002
Capsella grandiflora
Cagra.1718s0002
I
Carubv10005335m.g
Capsella rubella
Carubv10005335m.g
I
Thhalv10021177m.g
Eutrema salsugineum
Thhalv10021177m.g
I
Thhalv10025927m.g
Eutrema salsugineum
Thhalv10025927m.g
I
Gorai.011G172500
Gossypium raimondii
Gorai.011G172500
I
Solyc10g006510.2
Solanum lycopersicum
Solyc10g006510.2
I
PGSC0003DMG400014432
Solanum tuberosum
PGSC0003DMG400014432
I
PGSC0003DMG400019263
Solanum tuberosum
PGSC0003DMG400019263
I
TCM_020866
Theobroma cacao
TCM_020866
I
VIT_14s0081g00720
Vitis vinifera
VIT_14s0081g00720
I