ENSPFOG00000003997 (Poecilia formosa)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 ENSPFOG00000003997 T319464_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.969 0.969
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.969 0.969
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.969 0.969
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.969 0.969
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.969 0.969
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.969 0.969
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.969 0.969
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.969 0.969
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.969 0.969
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.969 0.969
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.969 0.969
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.969 0.969
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.931 0.931
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.931 0.931
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.931 0.931
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.931 0.931
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.931 0.931
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.931 0.931
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.931 0.931
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.931 0.931
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.931 0.931
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.931 0.931
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.931 0.931
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.931 0.931
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.931 0.931
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.931 0.931
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.931 0.931
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.931 0.931
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.931 0.931
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.931 0.931
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.931 0.931
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.931 0.931
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.931 0.931
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.931 0.931
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.931 0.931
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.931 0.931
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.731 0.731
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.731 0.731
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.731 0.731
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.731 0.731
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPFOP00000003953 Runt 61 190
ENSPFOP00000024790 Runt 61 190

Links

Other Runt family TFs
Other Poecilia formosa TFs

342 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BXY_1188800 Bursaphelenchus xylophilus BXY_1188800 N
BXY_1188900 Bursaphelenchus xylophilus BXY_1188900 N
CBN24070 Caenorhabditis brenneri CBN24070 I
CBN03440 Caenorhabditis brenneri CBN03440 I
CBN03769 Caenorhabditis brenneri CBN03769 I
CBN04619 Caenorhabditis brenneri CBN04619 I
CBN16902 Caenorhabditis brenneri CBN16902 I
CBN18264 Caenorhabditis brenneri CBN18264 I
CBG04789 Caenorhabditis briggsae CBG04789 I
CBG03687 Caenorhabditis briggsae CBG03687 I
CBG20699 Caenorhabditis briggsae CBG20699 I
CBG16375 Caenorhabditis briggsae CBG16375 I
CBG12152 Caenorhabditis briggsae CBG12152 I
nhr-273 Caenorhabditis elegans WBGene00020460 I
nhr-109 Caenorhabditis elegans WBGene00003699 I
nhr-86 Caenorhabditis elegans WBGene00003676 D
nhr-70 Caenorhabditis elegans WBGene00003660 D
nhr-53 Caenorhabditis elegans WBGene00003643 I
nhr-28 Caenorhabditis elegans WBGene00003624 I
nhr-16 Caenorhabditis elegans WBGene00003615 I
nhr-12 Caenorhabditis elegans WBGene00003611 I
CJA07390 Caenorhabditis japonica CJA07390 I
CJA04414 Caenorhabditis japonica CJA04414 I
CRE27659 Caenorhabditis remanei CRE27659 I
CRE27174 Caenorhabditis remanei CRE27174 I
CRE18529 Caenorhabditis remanei CRE18529 I
CRE17355 Caenorhabditis remanei CRE17355 I
CRE17354 Caenorhabditis remanei CRE17354 I
CRE17310 Caenorhabditis remanei CRE17310 I
CRE09011 Caenorhabditis remanei CRE09011 I
CRE07801 Caenorhabditis remanei CRE07801 I
EVEC_0001266201 Enterobius vermicularis EVEC_0001266201 I
EVEC_0001095701 Enterobius vermicularis EVEC_0001095701 I
NECAME_01500 Necator americanus NECAME_01500 I
scaffold260-EXSNAP2012.15 Pristionchus exspectatus scaffold260-EXSNAP2012.15 I
scaffold183-EXSNAP2012.18 Pristionchus exspectatus scaffold183-EXSNAP2012.18 I
scaffold1235-EXSNAP2012.2 Pristionchus exspectatus scaffold1235-EXSNAP2012.2 I
PPA29361 Pristionchus pacificus PPA29361 I
PPA10478 Pristionchus pacificus PPA10478 I
PPA08785 Pristionchus pacificus PPA08785 I
L596_g27786 Steinernema carpocapsae L596_g27786 I
L596_g9106 Steinernema carpocapsae L596_g9106 I
L889_g9698 Steinernema feltiae L889_g9698 I
L889_g987 Steinernema feltiae L889_g987 I
L889_g10781 Steinernema feltiae L889_g10781 I
L893_g2090 Steinernema glaseri L893_g2090 I
L893_g4569 Steinernema glaseri L893_g4569 I
L893_g9517 Steinernema glaseri L893_g9517 I
L898_g10723 Steinernema monticolum L898_g10723 I
L898_g18539 Steinernema monticolum L898_g18539 I
L898_g28806 Steinernema monticolum L898_g28806 I
L892_g8144 Steinernema scapterisci L892_g8144 I
L892_g8145 Steinernema scapterisci L892_g8145 I
L892_g8140 Steinernema scapterisci L892_g8140 I
L892_g10708 Steinernema scapterisci L892_g10708 I
SMUV_0000801801 Syphacia muris SMUV_0000801801 I
SMUV_0000886001 Syphacia muris SMUV_0000886001 I
SMUV_0000909301 Syphacia muris SMUV_0000909301 I