POPTR_0008s09810 (Populus trichocarpa)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 POPTR_0008s09810 T322955_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.967 0.827
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.966 0.827
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.966 0.827
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.966 0.827
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.965 0.920
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.963 0.827
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.963 0.813
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.953 0.827
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.953 0.827
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.953 0.827
PRUPE_ppa000682mg
M02478_2.00 		Prunus persica
NNNNGTACGD
HCGTACNNNN		 PBM
Weirauch et al.(2014)
pTH9281 		0.952 0.813
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.942 0.760
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.941 0.707
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.930 0.707
SPL5
M02474_2.00 		Arabidopsis thaliana
NNGTACGDN
NHCGTACNN		 PBM
Weirauch et al.(2014)
pTH7385 		0.930 0.693
SPL5
M07261_2.00 		Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN		 Dap-seq
OMalley et al.(2016)
SPL5_col_a 		0.930 0.693
SPL5
M07262_2.00 		Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN		 Dap-seq
OMalley et al.(2016)
SPL5_colamp_a 		0.930 0.693
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.922 0.693
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.922 0.693
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.922 0.693
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0008s09810.1 SBP 150 224

Links

Other SBP family TFs
Other Populus trichocarpa TFs

414 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_22967 Aegilops tauschii F775_22967 I
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I
Aquca_017_00683 Aquilegia coerulea Aquca_017_00683 I
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I
LBD16 Arabidopsis thaliana AT2G42430 D
LBD19 Arabidopsis thaliana AT2G45410 D
LBD20 Arabidopsis thaliana AT3G03760 I
LBD30 Arabidopsis thaliana AT4G00220 D
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I
Bo4g024610 Brassica oleracea Bo4g024610 I
Bo8g092560 Brassica oleracea Bo8g092560 I
Bra016877 Brassica rapa Bra016877 I
PK25573.1 Cannabis sativa PK25573.1 I
PK23380.1 Cannabis sativa PK23380.1 I
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I
Carubv10015417m.g Capsella rubella Carubv10015417m.g I
Carubv10025477m.g Capsella rubella Carubv10025477m.g I
Carubv10025548m.g Capsella rubella Carubv10025548m.g I
evm.TU.supercontig_1.438 Carica papaya evm.TU.supercontig_1.438 I
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I
Cla021625 Citrullus lanatus Cla021625 I
Cucsa.388160 Cucumis sativus Cucsa.388160 I
Cucsa.362830 Cucumis sativus Cucsa.362830 I
Eucgr.K03284 Eucalyptus grandis Eucgr.K03284 I
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I
gene26330-v1.0-hybrid Fragaria vesca gene26330-v1.0-hybrid N
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I
GLYMA19G34600 Glycine max GLYMA19G34600 I
GLYMA18G45320 Glycine max GLYMA18G45320 I
GLYMA10G04050 Glycine max GLYMA10G04050 I
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I
MLOC_61947 Hordeum vulgare MLOC_61947 I
LPERR02G31040 Leersia perrieri LPERR02G31040 I
LPERR08G20530 Leersia perrieri LPERR08G20530 I
Lus10033872.g Linum usitatissimum Lus10033872.g I
chr5.CM0494.160.nd Lotus japonicus chr5.CM0494.160.nd I
LjSGA_054888.1 Lotus japonicus LjSGA_054888.1 I
LjT35F15.70.nd Lotus japonicus LjT35F15.70.nd I
MDP0000429067 Malus domestica MDP0000429067 I
mgf020773m Mimulus guttatus mgf020773m I
GSMUA_AchrUn_randomG07730_001 Musa acuminata GSMUA_AchrUn_randomG07730_001 I
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I
GSMUA_Achr9G10530_001 Musa acuminata GSMUA_Achr9G10530_001 I
GSMUA_Achr8G14330_001 Musa acuminata GSMUA_Achr8G14330_001 I
GSMUA_Achr5G13230_001 Musa acuminata GSMUA_Achr5G13230_001 I
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I
GSMUA_Achr3G27340_001 Musa acuminata GSMUA_Achr3G27340_001 I
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I
OB03G20590 Oryza brachyantha OB03G20590 I
OB10G12360 Oryza brachyantha OB10G12360 I
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I
BGIOSGA005344 Oryza indica BGIOSGA005344 I
OLONG_028429 Oryza longistaminata OLONG_028429 I
OMERI02G35350 Oryza meridionalis OMERI02G35350 I
ONIVA02G40360 Oryza nivara ONIVA02G40360 I
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I
OS02G0820500 Oryza sativa OS02G0820500 I
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I
Pavir.J03376 Panicum virgatum Pavir.J03376 I
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I
POPTR_0010s20800 Populus trichocarpa POPTR_0010s20800 I
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I
Pm028642 Prunus mume Pm028642 I
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I
Si019578m.g Setaria italica Si019578m.g I
Si015156m.g Setaria italica Si015156m.g I
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I
Solyc06g083930.1 Solanum lycopersicum Solyc06g083930.1 I
Solyc09g066260.2 Solanum lycopersicum Solyc09g066260.2 I
PGSC0003DMG400020069 Solanum tuberosum PGSC0003DMG400020069 I
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I
Traes_6DL_850266B2A Triticum aestivum Traes_6DL_850266B2A I
TRIUR3_01477 Triticum urartu TRIUR3_01477 I
LBD16 Vitis vinifera VIT_07s0005g03030 I