smad1 (Tetraodon nigroviridis)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03165 (MH1) IPR003619 ENSTNIG00000017720 T324998_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMAD1
M11286_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD1_01 		0.951 0.951
SMAD1
M11287_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD1_Q6 		0.951 0.951
SMAD9
M11274_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD8_01 		0.922 0.922
Smad9
M11290_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD8_02 		0.922 0.922
Smad9
M11289_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD8_03 		0.922 0.922
Smad5
M11288_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD5_01 		0.912 0.912
Smad5
M11292_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD5_03 		0.912 0.912
Mad
M06446_2.00 		Drosophila melanogaster
GYGHCGBCVS
SBGVCGDCRC		 B1H
Zhu et al.(2011)
Mad_FlyReg_FBgn0011648 		0.892 0.892
Mad
M08427_2.00 		Drosophila melanogaster
SNGRCGMSRVSRBNS
SNVYSBYSKCGYCNS		 ChIP-chip
Mathelier et al.(2014)
MA0535.1 		0.892 0.892
Mad
M09692_2.00 		Drosophila melanogaster
KCBGSHGKCGCSNC
GNSGCGMCDSCVGM		 Misc
Kulakovskiy et al.(2009)
Mad 		0.892 0.892
Mad
M11293_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$MAD_Q6 		0.892 0.892
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000020870 SMAD 30 131

Links

Other SMAD family TFs
Other Tetraodon nigroviridis TFs

411 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_23096 Aegilops tauschii F775_23096 I
AMTR_s00006p00250310 Amborella trichopoda AMTR_s00006p00250310 I
AMTR_s00129p00124210 Amborella trichopoda AMTR_s00129p00124210 I
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I
Aquca_020_00579 Aquilegia coerulea Aquca_020_00579 I
Aquca_035_00175 Aquilegia coerulea Aquca_035_00175 I
BIM2 Arabidopsis lyrata fgenesh2_kg.2__1159__AT1G69010.1 I
ALC Arabidopsis lyrata fgenesh2_kg.8__2705__AT5G67110.1 I
BIM1 Arabidopsis lyrata scaffold_600819.1 I
UNE10 Arabidopsis lyrata scaffold_604304.1 I
BIM2 Arabidopsis thaliana AT1G69010 D
UNE10 Arabidopsis thaliana AT4G00050 D
BIM1 Arabidopsis thaliana AT5G08130 D
ALC Arabidopsis thaliana AT5G67110 I
Bostr.0568s0133 Boechera stricta Bostr.0568s0133 I
Bostr.10273s0468 Boechera stricta Bostr.10273s0468 I
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I
Bostr.14547s0014 Boechera stricta Bostr.14547s0014 I
BRADI3G38970 Brachypodium distachyon BRADI3G38970 I
BRADI3G46200 Brachypodium distachyon BRADI3G46200 I
BRADI3G56340 Brachypodium distachyon BRADI3G56340 I
BRADI4G32967 Brachypodium distachyon BRADI4G32967 I
Bo2g062560 Brassica oleracea Bo2g062560 I
Bo2g161110 Brassica oleracea Bo2g161110 I
Bo3g004690 Brassica oleracea Bo3g004690 I
Bo3g042120 Brassica oleracea Bo3g042120 I
Bo3g054850 Brassica oleracea Bo3g054850 I
Bo5g020460 Brassica oleracea Bo5g020460 I
Bo6g108530 Brassica oleracea Bo6g108530 I
Bo9g174770 Brassica oleracea Bo9g174770 I
Bra000560 Brassica rapa Bra000560 I
Bra004355 Brassica rapa Bra004355 I
Bra005969 Brassica rapa Bra005969 I
Bra009322 Brassica rapa Bra009322 I
Bra012133 Brassica rapa Bra012133 I
Bra029354 Brassica rapa Bra029354 I
Bra037312 Brassica rapa Bra037312 I
Bra038332 Brassica rapa Bra038332 I
PK00238.1 Cannabis sativa PK00238.1 I
PK01364.1 Cannabis sativa PK01364.1 I
PK08539.1 Cannabis sativa PK08539.1 I
PK10562.1 Cannabis sativa PK10562.1 I
PK20816.1 Cannabis sativa PK20816.1 I
Cagra.1157s0023 Capsella grandiflora Cagra.1157s0023 I
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I
Cagra.20893s0010 Capsella grandiflora Cagra.20893s0010 I
Carubv10000655m.g Capsella rubella Carubv10000655m.g I
Carubv10001567m.g Capsella rubella Carubv10001567m.g I
Carubv10020679m.g Capsella rubella Carubv10020679m.g I
Carubv10028570m.g Capsella rubella Carubv10028570m.g I
evm.TU.supercontig_212.3 Carica papaya evm.TU.supercontig_212.3 I
evm.TU.supercontig_289.6 Carica papaya evm.TU.supercontig_289.6 I
evm.TU.supercontig_3.225 Carica papaya evm.TU.supercontig_3.225 I
evm.TU.supercontig_82.59 Carica papaya evm.TU.supercontig_82.59 I
Ca_19269 Cicer arietinum Ca_19269 I
Ca_22043 Cicer arietinum Ca_22043 I
Ca_22883 Cicer arietinum Ca_22883 I
Cla018818 Citrullus lanatus Cla018818 I
Cla022382 Citrullus lanatus Cla022382 I
Ciclev10008008m.g Citrus clementina Ciclev10008008m.g I
Ciclev10012135m.g Citrus clementina Ciclev10012135m.g I
Ciclev10019786m.g Citrus clementina Ciclev10019786m.g I
Ciclev10020053m.g Citrus clementina Ciclev10020053m.g I
Ciclev10020248m.g Citrus clementina Ciclev10020248m.g I
Ciclev10032020m.g Citrus clementina Ciclev10032020m.g I
orange1.1g010045m.g Citrus sinensis orange1.1g010045m.g I
orange1.1g012387m.g Citrus sinensis orange1.1g012387m.g I
orange1.1g019485m.g Citrus sinensis orange1.1g019485m.g I
orange1.1g019960m.g Citrus sinensis orange1.1g019960m.g I
orange1.1g038097m.g Citrus sinensis orange1.1g038097m.g I
orange1.1g038451m.g Citrus sinensis orange1.1g038451m.g I
Cucsa.113490 Cucumis sativus Cucsa.113490 I
Cucsa.174600 Cucumis sativus Cucsa.174600 I
Cucsa.198520 Cucumis sativus Cucsa.198520 I
Cucsa.328060 Cucumis sativus Cucsa.328060 I
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I
Eucgr.B03113 Eucalyptus grandis Eucgr.B03113 I
Eucgr.D02499 Eucalyptus grandis Eucgr.D02499 I
Eucgr.I02069 Eucalyptus grandis Eucgr.I02069 I
Thhalv10004889m.g Eutrema salsugineum Thhalv10004889m.g I
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I
Thhalv10018889m.g Eutrema salsugineum Thhalv10018889m.g I
Thhalv10027863m.g Eutrema salsugineum Thhalv10027863m.g I
Thhalv10028687m.g Eutrema salsugineum Thhalv10028687m.g I
gene04534-v1.0-hybrid Fragaria vesca gene04534-v1.0-hybrid I
gene09125-v1.0-hybrid Fragaria vesca gene09125-v1.0-hybrid I
gene25546-v1.0-hybrid Fragaria vesca gene25546-v1.0-hybrid I
gene26139-v1.0-hybrid Fragaria vesca gene26139-v1.0-hybrid I
GLYMA01G09010 Glycine max GLYMA01G09010 I
GLYMA01G15930 Glycine max GLYMA01G15930 I
GLYMA01G32890 Glycine max GLYMA01G32890 I
GLYMA02G13670 Glycine max GLYMA02G13670 I
GLYMA03G04000 Glycine max GLYMA03G04000 I
GLYMA05G07490 Glycine max GLYMA05G07490 I
GLYMA08G28010 Glycine max GLYMA08G28010 I
GLYMA11G17120 Glycine max GLYMA11G17120 I
GLYMA17G08980 Glycine max GLYMA17G08980 I
GLYMA18G51080 Glycine max GLYMA18G51080 I
Gorai.001G148300 Gossypium raimondii Gorai.001G148300 I
Gorai.001G197500 Gossypium raimondii Gorai.001G197500 I
Gorai.006G269200 Gossypium raimondii Gorai.006G269200 I
Gorai.007G040600 Gossypium raimondii Gorai.007G040600 I
Gorai.007G088300 Gossypium raimondii Gorai.007G088300 I
Gorai.007G118100 Gossypium raimondii Gorai.007G118100 I
Gorai.008G106900 Gossypium raimondii Gorai.008G106900 I
Gorai.009G038500 Gossypium raimondii Gorai.009G038500 I
Gorai.009G327300 Gossypium raimondii Gorai.009G327300 I
Gorai.013G098000 Gossypium raimondii Gorai.013G098000 I
MLOC_62335 Hordeum vulgare MLOC_62335 I
LPERR06G03910 Leersia perrieri LPERR06G03910 I
LPERR06G05570 Leersia perrieri LPERR06G05570 I
LPERR08G15680 Leersia perrieri LPERR08G15680 I
LPERR09G10080 Leersia perrieri LPERR09G10080 I
Lus10004630.g Linum usitatissimum Lus10004630.g I
Lus10007974.g Linum usitatissimum Lus10007974.g I
Lus10013502.g Linum usitatissimum Lus10013502.g I
Lus10026684.g Linum usitatissimum Lus10026684.g I
Lus10034358.g Linum usitatissimum Lus10034358.g I
MDP0000261293 Malus domestica MDP0000261293 I
MDP0000439540 Malus domestica MDP0000439540 I
cassava10497.m1 Manihot esculenta cassava10497.m1 I
cassava13956.valid.m1 Manihot esculenta cassava13956.valid.m1 I
cassava14.valid.m1 Manihot esculenta cassava14.valid.m1 I
cassava15.valid.m1 Manihot esculenta cassava15.valid.m1 I
cassava19894.m1 Manihot esculenta cassava19894.m1 I
cassava29314.valid.m1 Manihot esculenta cassava29314.valid.m1 I
cassava29318.valid.m1 Manihot esculenta cassava29318.valid.m1 I
cassava43370.valid.m1 Manihot esculenta cassava43370.valid.m1 I
cassava43379.valid.m1 Manihot esculenta cassava43379.valid.m1 I
MTR_1g019240 Medicago truncatula MTR_1g019240 I
MTR_4g110040 Medicago truncatula MTR_4g110040 I
MTR_5g048350 Medicago truncatula MTR_5g048350 I
MTR_7g017320 Medicago truncatula MTR_7g017320 I
mgf001137m Mimulus guttatus mgf001137m I
mgf005431m Mimulus guttatus mgf005431m I
mgf005849m Mimulus guttatus mgf005849m I
mgf011829m Mimulus guttatus mgf011829m I
mgf013208m Mimulus guttatus mgf013208m I
GSMUA_Achr2G05450_001 Musa acuminata GSMUA_Achr2G05450_001 I
GSMUA_Achr3G10640_001 Musa acuminata GSMUA_Achr3G10640_001 I
GSMUA_Achr4G19530_001 Musa acuminata GSMUA_Achr4G19530_001 I
GSMUA_Achr9G19110_001 Musa acuminata GSMUA_Achr9G19110_001 I
GSMUA_Achr9G28050_001 Musa acuminata GSMUA_Achr9G28050_001 I
OBART02G20940 Oryza barthii OBART02G20940 I
OBART06G04330 Oryza barthii OBART06G04330 I
OBART06G06000 Oryza barthii OBART06G06000 I
OBART09G13850 Oryza barthii OBART09G13850 I
OB02G28530 Oryza brachyantha OB02G28530 I
OB02G38020 Oryza brachyantha OB02G38020 I
OB08G25940 Oryza brachyantha OB08G25940 I
ORGLA02G0180000 Oryza glaberrima ORGLA02G0180000 I
ORGLA02G0264700 Oryza glaberrima ORGLA02G0264700 I
ORGLA06G0039900 Oryza glaberrima ORGLA06G0039900 I
ORGLA06G0286200 Oryza glaberrima ORGLA06G0286200 I
ORGLA08G0164200 Oryza glaberrima ORGLA08G0164200 I
ORGLA09G0105800 Oryza glaberrima ORGLA09G0105800 I
OGLUM02G21200 Oryza glumaepatula OGLUM02G21200 I
OGLUM06G04430 Oryza glumaepatula OGLUM06G04430 I
OGLUM06G06280 Oryza glumaepatula OGLUM06G06280 I
OGLUM08G19830 Oryza glumaepatula OGLUM08G19830 I
OGLUM09G14430 Oryza glumaepatula OGLUM09G14430 I
BGIOSGA005697 Oryza indica BGIOSGA005697 I
BGIOSGA006236 Oryza indica BGIOSGA006236 I
BGIOSGA021743 Oryza indica BGIOSGA021743 I
BGIOSGA022375 Oryza indica BGIOSGA022375 I
BGIOSGA028888 Oryza indica BGIOSGA028888 I
BGIOSGA030958 Oryza indica BGIOSGA030958 I
OLONG_003583 Oryza longistaminata OLONG_003583 I
OLONG_013313 Oryza longistaminata OLONG_013313 I
OLONG_020060 Oryza longistaminata OLONG_020060 I
OLONG_025501 Oryza longistaminata OLONG_025501 I
OMERI02G20700 Oryza meridionalis OMERI02G20700 I
OMERI06G05430 Oryza meridionalis OMERI06G05430 I
OMERI06G07190 Oryza meridionalis OMERI06G07190 I
OMERI09G10560 Oryza meridionalis OMERI09G10560 I
ONIVA02G23040 Oryza nivara ONIVA02G23040 I
ONIVA06G05510 Oryza nivara ONIVA06G05510 I
ONIVA06G06960 Oryza nivara ONIVA06G06960 I
ONIVA08G20800 Oryza nivara ONIVA08G20800 I
ONIVA09G14370 Oryza nivara ONIVA09G14370 I
OPUNC02G18940 Oryza punctata OPUNC02G18940 I
OPUNC06G05770 Oryza punctata OPUNC06G05770 I
OPUNC08G16820 Oryza punctata OPUNC08G16820 I
OPUNC09G12310 Oryza punctata OPUNC09G12310 I
ORUFI02G21960 Oryza rufipogon ORUFI02G21960 I
ORUFI06G04330 Oryza rufipogon ORUFI06G04330 I
ORUFI06G06220 Oryza rufipogon ORUFI06G06220 I
ORUFI08G21030 Oryza rufipogon ORUFI08G21030 I
ORUFI09G14830 Oryza rufipogon ORUFI09G14830 I
OS02G0564700 Oryza sativa OS02G0564700 I
OS02G0726700 Oryza sativa OS02G0726700 I
OS06G0193400 Oryza sativa OS06G0193400 I
OS08G0490000 Oryza sativa OS08G0490000 I
OS09G0475400 Oryza sativa OS09G0475400 I
Pavir.Aa00700 Panicum virgatum Pavir.Aa00700 I
Pavir.Aa01634 Panicum virgatum Pavir.Aa01634 I
Pavir.Ab02747 Panicum virgatum Pavir.Ab02747 I
Pavir.Ab03017 Panicum virgatum Pavir.Ab03017 I
Pavir.Db01966 Panicum virgatum Pavir.Db01966 I
Pavir.Fb01833 Panicum virgatum Pavir.Fb01833 I
Pavir.J04606 Panicum virgatum Pavir.J04606 I
Pavir.J15280 Panicum virgatum Pavir.J15280 I
Pavir.J15575 Panicum virgatum Pavir.J15575 I
Pavir.J38250 Panicum virgatum Pavir.J38250 I
Pavir.J38910 Panicum virgatum Pavir.J38910 I
e_gw1.167.42.1 Physcomitrella patens e_gw1.167.42.1 I
estExt_fgenesh1_pg.C_2110039 Physcomitrella patens estExt_fgenesh1_pg.C_2110039 I
fgenesh1_pg.scaffold_37000071 Physcomitrella patens fgenesh1_pg.scaffold_37000071 D
gw1.90.123.1 Physcomitrella patens gw1.90.123.1 I
POPTR_0002s14430 Populus trichocarpa POPTR_0002s14430 I
POPTR_0004s11180 Populus trichocarpa POPTR_0004s11180 I
POPTR_0006s13790 Populus trichocarpa POPTR_0006s13790 I
POPTR_0008s11120 Populus trichocarpa POPTR_0008s11120 I
POPTR_0010s14740 Populus trichocarpa POPTR_0010s14740 I
POPTR_0012s06650 Populus trichocarpa POPTR_0012s06650 I
POPTR_0015s03550 Populus trichocarpa POPTR_0015s03550 I
POPTR_0017s13610 Populus trichocarpa POPTR_0017s13610 I
PRUPE_ppa003436mg Prunus persica PRUPE_ppa003436mg I
PRUPE_ppa005629mg Prunus persica PRUPE_ppa005629mg I
PRUPE_ppa008387mg Prunus persica PRUPE_ppa008387mg I
PRUPE_ppa008856mg Prunus persica PRUPE_ppa008856mg I
29739.m003684 Ricinus communis 29739.m003684 I
29790.m000843 Ricinus communis 29790.m000843 I
30138.m003899 Ricinus communis 30138.m003899 I
30138.m003913 Ricinus communis 30138.m003913 I
30174.m008814 Ricinus communis 30174.m008814 I
SapurV1A.0033s0400 Salix purpurea SapurV1A.0033s0400 I
SapurV1A.0060s0510 Salix purpurea SapurV1A.0060s0510 I
SapurV1A.0084s0570 Salix purpurea SapurV1A.0084s0570 I
SapurV1A.0178s0150 Salix purpurea SapurV1A.0178s0150 I
SapurV1A.0249s0140 Salix purpurea SapurV1A.0249s0140 I
SapurV1A.0274s0040 Salix purpurea SapurV1A.0274s0040 I
SapurV1A.0321s0050 Salix purpurea SapurV1A.0321s0050 I
SapurV1A.0868s0010 Salix purpurea SapurV1A.0868s0010 I
SapurV1A.2517s0020 Salix purpurea SapurV1A.2517s0020 I
SELMODRAFT_425336 Selaginella moellendorffii SELMODRAFT_425336 I
SELMODRAFT_451475 Selaginella moellendorffii SELMODRAFT_451475 I
SELMODRAFT_451477 Selaginella moellendorffii SELMODRAFT_451477 I
Si006332m.g Setaria italica Si006332m.g I
Si013622m.g Setaria italica Si013622m.g I
Si016505m.g Setaria italica Si016505m.g I
Si016939m.g Setaria italica Si016939m.g I
Si029604m.g Setaria italica Si029604m.g I
Solyc01g090790.2 Solanum lycopersicum Solyc01g090790.2 I
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I
Solyc04g005280.2 Solanum lycopersicum Solyc04g005280.2 I
Solyc05g011810.2 Solanum lycopersicum Solyc05g011810.2 I
Solyc06g069370.2 Solanum lycopersicum Solyc06g069370.2 I
PGSC0003DMG400001919 Solanum tuberosum PGSC0003DMG400001919 I
PGSC0003DMG400019654 Solanum tuberosum PGSC0003DMG400019654 I
PGSC0003DMG400025976 Solanum tuberosum PGSC0003DMG400025976 I
PGSC0003DMG401007955 Solanum tuberosum PGSC0003DMG401007955 I
Sb02g027460 Sorghum bicolor Sb02g027460 I
Sb04g023320 Sorghum bicolor Sb04g023320 I
Sb04g029270 Sorghum bicolor Sb04g029270 I
Sb07g028860 Sorghum bicolor Sb07g028860 I
Sb10g004500 Sorghum bicolor Sb10g004500 I
Sb10g006250 Sorghum bicolor Sb10g006250 I
TCM_004959 Theobroma cacao TCM_004959 I
TCM_005607 Theobroma cacao TCM_005607 I
TCM_011433 Theobroma cacao TCM_011433 I
TCM_014392 Theobroma cacao TCM_014392 I
TCM_019015 Theobroma cacao TCM_019015 I
TCM_037455 Theobroma cacao TCM_037455 I
Traes_5AL_0D4BDDDCD Triticum aestivum Traes_5AL_0D4BDDDCD I
Traes_5BL_AAC9C7238 Triticum aestivum Traes_5BL_AAC9C7238 I
Traes_5DL_E96693018 Triticum aestivum Traes_5DL_E96693018 I
Traes_6AL_52FA7F228 Triticum aestivum Traes_6AL_52FA7F228 N
Traes_6BL_DA93728B3 Triticum aestivum Traes_6BL_DA93728B3 I
Traes_6DL_D38F3257B Triticum aestivum Traes_6DL_D38F3257B I
BIM2 Vitis vinifera VIT_01s0010g00540 I
VIT_11s0016g00380 Vitis vinifera VIT_11s0016g00380 I
BIM3 Vitis vinifera VIT_14s0083g00930 I
UNE10 Vitis vinifera VIT_15s0021g02690 I
BIM1 Vitis vinifera VIT_17s0000g04790 I
GRMZM2G009478 Zea mays GRMZM2G009478 I
GRMZM2G017349 Zea mays GRMZM2G017349 I
GRMZM2G024530 Zea mays GRMZM2G024530 I
GRMZM2G089501 Zea mays GRMZM2G089501 I
GRMZM2G116785 Zea mays GRMZM2G116785 I
GRMZM2G317450 Zea mays GRMZM2G317450 I
GRMZM5G839518 Zea mays GRMZM5G839518 I