MTR_2g090960 (Medicago truncatula)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 MTR_2g090960 T344038_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.951 0.578
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.951 0.552
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.951 0.552
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.951 0.552
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.948 0.569
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.943 0.560
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.905 0.474
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.894 0.431
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.886 0.422
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.864 0.405
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.851 0.397
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.850 0.414
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.850 0.414
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.840 0.353
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH39232 TCP 22 201

Links

Other TCP family TFs
Other Medicago truncatula TFs

423 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00077p00190160 Amborella trichopoda AMTR_s00077p00190160 N
Aquca_004_00566 Aquilegia coerulea Aquca_004_00566 N
SCR Arabidopsis lyrata fgenesh2_kg.5__1811__AT3G54220.1 N
SCR Arabidopsis thaliana AT3G54220 N
Bostr.0697s0034 Boechera stricta Bostr.0697s0034 N
Bo8g083500 Brassica oleracea Bo8g083500 N
Bra007056 Brassica rapa Bra007056 N
Cagra.0562s0013 Capsella grandiflora Cagra.0562s0013 N
Carubv10016802m.g Capsella rubella Carubv10016802m.g N
evm.TU.supercontig_1018.1 Carica papaya evm.TU.supercontig_1018.1 N
Ca_09530 Cicer arietinum Ca_09530 N
Cla012346 Citrullus lanatus Cla012346 N
Ciclev10011085m.g Citrus clementina Ciclev10011085m.g N
orange1.1g014896m.g Citrus sinensis orange1.1g014896m.g N
Cucsa.002880 Cucumis sativus Cucsa.002880 N
Eucgr.K01320 Eucalyptus grandis Eucgr.K01320 N
Thhalv10010179m.g Eutrema salsugineum Thhalv10010179m.g N
gene13644-v1.0-hybrid Fragaria vesca gene13644-v1.0-hybrid N
GLYMA18G45220 Glycine max GLYMA18G45220 N
GLYMA09G40620 Glycine max GLYMA09G40620 N
Gorai.006G236200 Gossypium raimondii Gorai.006G236200 N
Gorai.005G001300 Gossypium raimondii Gorai.005G001300 N
MLOC_64716 Hordeum vulgare MLOC_64716 N
LPERR12G01340 Leersia perrieri LPERR12G01340 N
Lus10016496.g Linum usitatissimum Lus10016496.g N
Lus10040734.g Linum usitatissimum Lus10040734.g N
chr1.CM1255.400.nc Lotus japonicus chr1.CM1255.400.nc N
MDP0000397638 Malus domestica MDP0000397638 N
cassava25218.valid.m1 Manihot esculenta cassava25218.valid.m1 N
cassava36326.valid.m1 Manihot esculenta cassava36326.valid.m1 N
MTR_7g074650 Medicago truncatula MTR_7g074650 N
mgf012242m Mimulus guttatus mgf012242m N
GSMUA_Achr8G09400_001 Musa acuminata GSMUA_Achr8G09400_001 N
OBART11G01460 Oryza barthii OBART11G01460 N
OBART12G01190 Oryza barthii OBART12G01190 N
OGLUM11G01180 Oryza glumaepatula OGLUM11G01180 N
BGIOSGA034703 Oryza indica BGIOSGA034703 N
BGIOSGA036912 Oryza indica BGIOSGA036912 N
OLONG_010321 Oryza longistaminata OLONG_010321 N
ORUFI11G01380 Oryza rufipogon ORUFI11G01380 N
ORUFI12G01460 Oryza rufipogon ORUFI12G01460 N
SCR1 Oryza sativa OS11G0124300 N
SCR2 Oryza sativa OS12G0122000 N
Pavir.J08573 Panicum virgatum Pavir.J08573 N
POPTR_0016s15060 Populus trichocarpa POPTR_0016s15060 N
Pm002956 Prunus mume Pm002956 N
PRUPE_ppa001546mg Prunus persica PRUPE_ppa001546mg N
30073.m002204 Ricinus communis 30073.m002204 N
SapurV1A.1165s0100 Salix purpurea SapurV1A.1165s0100 N
SapurV1A.0208s0090 Salix purpurea SapurV1A.0208s0090 N
SELMODRAFT_432115 Selaginella moellendorffii SELMODRAFT_432115 N
Solyc10g074680.1 Solanum lycopersicum Solyc10g074680.1 N
PGSC0003DMG400016833 Solanum tuberosum PGSC0003DMG400016833 N
Sb05g001500 Sorghum bicolor Sb05g001500 N
TCM_017746 Theobroma cacao TCM_017746 N
Traes_4DS_2CE9E3235 Triticum aestivum Traes_4DS_2CE9E3235 N
Traes_4BS_A05D3DC53 Triticum aestivum Traes_4BS_A05D3DC53 N
Traes_5BL_C02570726 Triticum aestivum Traes_5BL_C02570726 N
SCR Vitis vinifera VIT_08s0056g00050 N
GRMZM2G131516 Zea mays GRMZM2G131516 N
GRMZM2G015080 Zea mays GRMZM2G015080 N