Carubv10002472m.g (Capsella rubella)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Carubv10002472m.g T355943_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY38
M00901_2.00 		Arabidopsis thaliana
NNRGTCAACBN
NVGTTGACYNN		 PBM
Franco-Zorrilla et al.(2014)
WRKY38 		0.871 0.915
WRKY62
M02561_2.00 		Arabidopsis thaliana
TRGTCAAM
KTTGACYA		 PBM
Weirauch et al.(2014)
pTH8246 		0.833 0.661
WRKY63
M02546_2.00 		Arabidopsis thaliana
NGGTCAAN
NTTGACCN		 PBM
Weirauch et al.(2014)
pTH8182 		0.824 0.661
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10002472m WRKY 113 173

Links

Other WRKY family TFs
Other Capsella rubella TFs

67 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_17920 Aegilops tauschii F775_17920 I
AMTR_s00022p00216890 Amborella trichopoda AMTR_s00022p00216890 I
AMTR_s00119p00117410 Amborella trichopoda AMTR_s00119p00117410 I
Aquca_007_00017 Aquilegia coerulea Aquca_007_00017 I
EIL3 Arabidopsis lyrata scaffold_202309.1 I
EIL3 Arabidopsis thaliana AT1G73730 D
Bostr.3288s0016 Boechera stricta Bostr.3288s0016 I
BRADI1G63780 Brachypodium distachyon BRADI1G63780 I
BRADI3G39970 Brachypodium distachyon BRADI3G39970 I
BRADI4G33750 Brachypodium distachyon BRADI4G33750 I
Bo6g087550 Brassica oleracea Bo6g087550 I
Bo6g118030 Brassica oleracea Bo6g118030 I
Bra008110 Brassica rapa Bra008110 I
Bra015970 Brassica rapa Bra015970 I
PK19114.1 Cannabis sativa PK19114.1 I
Cagra.0876s0005 Capsella grandiflora Cagra.0876s0005 I
Carubv10020043m.g Capsella rubella Carubv10020043m.g I
Ca_02669 Cicer arietinum Ca_02669 I
Ciclev10015261m.g Citrus clementina Ciclev10015261m.g I
orange1.1g007662m.g Citrus sinensis orange1.1g007662m.g I
Cucsa.143220 Cucumis sativus Cucsa.143220 I
Eucgr.B03664 Eucalyptus grandis Eucgr.B03664 I
Thhalv10018327m.g Eutrema salsugineum Thhalv10018327m.g I
gene20650-v1.0-hybrid Fragaria vesca gene20650-v1.0-hybrid I
GLYMA13G41751 Glycine max GLYMA13G41751 I
GLYMA15G03650 Glycine max GLYMA15G03650 I
Gorai.009G071400 Gossypium raimondii Gorai.009G071400 I
Gorai.010G128700 Gossypium raimondii Gorai.010G128700 I
Gorai.013G250300 Gossypium raimondii Gorai.013G250300 I
MLOC_10315 Hordeum vulgare MLOC_10315 I
MLOC_10823 Hordeum vulgare MLOC_10823 I
LPERR03G13760 Leersia perrieri LPERR03G13760 I
LPERR08G16890 Leersia perrieri LPERR08G16890 I
LPERR09G10870 Leersia perrieri LPERR09G10870 I
Lus10031245.g Linum usitatissimum Lus10031245.g I
Lus10031817.g Linum usitatissimum Lus10031817.g I
chr3.LjB09K03.50.nc Lotus japonicus chr3.LjB09K03.50.nc I
MDP0000490180 Malus domestica MDP0000490180 I
MDP0000562585 Malus domestica MDP0000562585 I
MDP0000565880 Malus domestica MDP0000565880 I
cassava2120.valid.m1 Manihot esculenta cassava2120.valid.m1 I
cassava30700.valid.m1 Manihot esculenta cassava30700.valid.m1 I
MTR_2g098470 Medicago truncatula MTR_2g098470 I
mgf020935m Mimulus guttatus mgf020935m I
GSMUA_Achr8G25580_001 Musa acuminata GSMUA_Achr8G25580_001 I
GSMUA_Achr9G27680_001 Musa acuminata GSMUA_Achr9G27680_001 I
OBART08G19960 Oryza barthii OBART08G19960 I
OBART09G14750 Oryza barthii OBART09G14750 I
OB08G26880 Oryza brachyantha OB08G26880 I
OB09G21280 Oryza brachyantha OB09G21280 I
ORGLA09G0113600 Oryza glaberrima ORGLA09G0113600 I
OGLUM08G21190 Oryza glumaepatula OGLUM08G21190 I
OGLUM09G15380 Oryza glumaepatula OGLUM09G15380 I
BGIOSGA029545 Oryza indica BGIOSGA029545 I
OMERI05G02190 Oryza meridionalis OMERI05G02190 I
OMERI08G16770 Oryza meridionalis OMERI08G16770 I
OMERI09G11470 Oryza meridionalis OMERI09G11470 I
ONIVA08G17420 Oryza nivara ONIVA08G17420 I
ONIVA08G22530 Oryza nivara ONIVA08G22530 I
OPUNC08G18080 Oryza punctata OPUNC08G18080 I
OPUNC09G13210 Oryza punctata OPUNC09G13210 I
ORUFI08G22370 Oryza rufipogon ORUFI08G22370 I
ORUFI09G15900 Oryza rufipogon ORUFI09G15900 I
OS08G0508700 Oryza sativa OS08G0508700 I
OS09G0490200 Oryza sativa OS09G0490200 D
Pavir.Fa00424 Panicum virgatum Pavir.Fa00424 I
Pavir.Fb01951 Panicum virgatum Pavir.Fb01951 I
Pavir.Ib01512 Panicum virgatum Pavir.Ib01512 I
Pavir.J02229 Panicum virgatum Pavir.J02229 I
Pavir.J14329 Panicum virgatum Pavir.J14329 I
PDK_20s1301801g002 Phoenix dactylifera PDK_20s1301801g002 I
e_gw1.11.194.1 Physcomitrella patens e_gw1.11.194.1 I
e_gw1.87.73.1 Physcomitrella patens e_gw1.87.73.1 D
POPTR_0001s05360 Populus trichocarpa POPTR_0001s05360 I
POPTR_0001s05370 Populus trichocarpa POPTR_0001s05370 I
POPTR_0003s22090 Populus trichocarpa POPTR_0003s22090 I
Pm028171 Prunus mume Pm028171 I
PRUPE_ppa003113mg Prunus persica PRUPE_ppa003113mg I
30169.m006395 Ricinus communis 30169.m006395 I
SapurV1A.0009s0320 Salix purpurea SapurV1A.0009s0320 I
SapurV1A.0850s0030 Salix purpurea SapurV1A.0850s0030 I
SELMODRAFT_112063 Selaginella moellendorffii SELMODRAFT_112063 I
SELMODRAFT_136229 Selaginella moellendorffii SELMODRAFT_136229 I
Si013426m.g Setaria italica Si013426m.g I
Si029259m.g Setaria italica Si029259m.g I
Si034616m.g Setaria italica Si034616m.g I
Solyc01g006650.1 Solanum lycopersicum Solyc01g006650.1 I
Solyc01g014480.2 Solanum lycopersicum Solyc01g014480.2 I
PGSC0003DMG400021381 Solanum tuberosum PGSC0003DMG400021381 I
PGSC0003DMG400029908 Solanum tuberosum PGSC0003DMG400029908 I
Sb02g028390 Sorghum bicolor Sb02g028390 I
Sb07g027790 Sorghum bicolor Sb07g027790 I
TCM_040510 Theobroma cacao TCM_040510 I
Traes_4BL_F34EBD618 Triticum aestivum Traes_4BL_F34EBD618 I
Traes_4DL_C083C804E Triticum aestivum Traes_4DL_C083C804E I
Traes_5AL_B65EF5518 Triticum aestivum Traes_5AL_B65EF5518 I
Traes_5BL_B6051DD37 Triticum aestivum Traes_5BL_B6051DD37 I
Traes_7AS_34D476D5D1 Triticum aestivum Traes_7AS_34D476D5D1 I
Traes_7BS_733347AC0 Triticum aestivum Traes_7BS_733347AC0 I
Traes_7DS_3673F1C73 Triticum aestivum Traes_7DS_3673F1C73 I
TRIUR3_28079 Triticum urartu TRIUR3_28079 I
EIL3 Vitis vinifera VIT_06s0004g01610 I
AC234203.1_FG011 Zea mays AC234203.1_FG011 I
GRMZM2G006752 Zea mays GRMZM2G006752 I
GRMZM2G317584 Zea mays GRMZM2G317584 I