CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GRMZM2G179366
(
Zea mays
)
BBR
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF06217 (GAGA_bind)
IPR010409
GRMZM2G179366
T024621_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G179366_P01
BBR
1
350
MDDDDGSLGIRNWGFYDTMKGNLGLQLMSSMPPDRDTKPLLPRAGFLQQHGHHNASHQLHAQQSQHYRDSTCGGGASGGMPTEQHSIHMDFSRNEAWLHPSHHHQHPHDQKVLHSRPTVPAGHVGHPGHGSHPVHGGHIVHHHPTGYGSISDAQHTLQMMQPQLESQLQEPPPCKGDEAPPPPIEDHSVVSTGPPVKKRQRGQQQSRQPKSPKPKKPKKVAVLPEGGALNGHAPRRRGPKKAVGMVINGIELDLANLPTPVCSCTGTPQQCYRWGAGGWQSACCTTAISTYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLVNPIDLKTFWAKHGTNKFVTIR
GRMZM2G179366_P02
BBR
1
350
MDDDDGSLGIRNWGFYDTMKGNLGLQLMSSMPPDRDTKPLLPRAGFLQQHGHHNASHQLHAQQSQHYRDSTCGGGASGGMPTEQHSIHMDFSRNEAWLHPSHHHQHPHDQKVLHSRPTVPAGHVGHPGHGSHPVHGGHIVHHHPTGYGSISDAQHTLQMMQPQLESQLQEPPPCKGDEAPPPPIEDHSVVSTGPPVKKRQRGQQQSRQPKSPKPKKPKKVAVLPEGGALNGHAPRRRGPKKAVGMVINGIELDLANLPTPVCSCTGTPQQCYRWGAGGWQSACCTTAISTYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLVNPIDLKTFWAKHGTNKFVTIR
Links
Other
BBR
family TFs
Other
Zea mays
TFs
15 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GRMZM2G164735
Zea mays
GRMZM2G164735
N
0.912
Sb10g004880
Sorghum bicolor
Sb10g004880
N
0.866
Sb02g009750
Sorghum bicolor
Sb02g009750
N
0.845
Sb02g009782
Sorghum bicolor
Sb02g009782
N
0.845
Si029480m.g
Setaria italica
Si029480m.g
N
0.810
Si036337m.g
Setaria italica
Si036337m.g
N
0.768
Pavir.J31488
Panicum virgatum
Pavir.J31488
N
0.764
Pavir.Ia04968
Panicum virgatum
Pavir.Ia04968
N
0.754
Pavir.Ba02367
Panicum virgatum
Pavir.Ba02367
N
0.750
Pavir.Bb00953
Panicum virgatum
Pavir.Bb00953
N
0.746
Traes_4AS_48979CBE1
Triticum aestivum
Traes_4AS_48979CBE1
N
0.718
MLOC_13459
Hordeum vulgare
MLOC_13459
N
0.715
F775_06914
Aegilops tauschii
F775_06914
N
0.711
Traes_4DL_AE5093871
Triticum aestivum
Traes_4DL_AE5093871
N
0.711