Cagra.1225s0078 (Capsella grandiflora)
SAND

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01342 (SAND) IPR000770 Cagra.1225s0078 T322237_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1225s0078.1.p SAND 30 115

Links

Other SAND family TFs
Other Capsella grandiflora TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.7867s0654 Boechera stricta Bostr.7867s0654 N 0.993
Carubv10005638m.g Capsella rubella Carubv10005638m.g N 0.993
Bo7g111950 Brassica oleracea Bo7g111950 N 0.990
ULT1 Arabidopsis lyrata fgenesh2_kg.7__1389__AT4G28190.1 N 0.988
Bo1g051270 Brassica oleracea Bo1g051270 N 0.987
Bra026276 Brassica rapa Bra026276 N 0.985
GLYMA12G11800 Glycine max GLYMA12G11800 N 0.978
GLYMA06G45180 Glycine max GLYMA06G45180 N 0.977
cassava18740.valid.m1 Manihot esculenta cassava18740.valid.m1 N 0.977
ULT1 Arabidopsis thaliana AT4G28190 N 0.961
SapurV1A.0048s0510 Salix purpurea SapurV1A.0048s0510 N 0.950
Bra024219 Brassica rapa Bra024219 N 0.949
VIT_12s0059g01980 Vitis vinifera VIT_12s0059g01980 N 0.949
PGSC0003DMG400018322 Solanum tuberosum PGSC0003DMG400018322 N 0.946
cassava12533.valid.m1 Manihot esculenta cassava12533.valid.m1 N 0.944
evm.TU.supercontig_34.111 Carica papaya evm.TU.supercontig_34.111 N 0.944
Solyc07g054450.2 Solanum lycopersicum Solyc07g054450.2 N 0.943
SapurV1A.2807s0020 Salix purpurea SapurV1A.2807s0020 N 0.941
PRUPE_ppa017439mg Prunus persica PRUPE_ppa017439mg N 0.939
POPTR_0013s14170 Populus trichocarpa POPTR_0013s14170 N 0.937
Pm015354 Prunus mume Pm015354 N 0.936
MDP0000237588 Malus domestica MDP0000237588 N 0.933
MDP0000315130 Malus domestica MDP0000315130 N 0.933
TCM_007971 Theobroma cacao TCM_007971 N 0.922
SapurV1A.0492s0170 Salix purpurea SapurV1A.0492s0170 N 0.921
Gorai.008G152400 Gossypium raimondii Gorai.008G152400 N 0.920
POPTR_0019s13550 Populus trichocarpa POPTR_0019s13550 N 0.918
chr3.CM0711.550.nd Lotus japonicus chr3.CM0711.550.nd N 0.917
MTR_2g090080 Medicago truncatula MTR_2g090080 N 0.914
Ca_19014 Cicer arietinum Ca_19014 N 0.907
Bo00902s070 Brassica oleracea Bo00902s070 N 0.897
Bra036504 Brassica rapa Bra036504 N 0.897
Bostr.7903s0074 Boechera stricta Bostr.7903s0074 N 0.881
Cagra.20132s0010 Capsella grandiflora Cagra.20132s0010 N 0.879
ULT2 Arabidopsis thaliana AT2G20825 N 0.873
gene10278-v1.0-hybrid Fragaria vesca gene10278-v1.0-hybrid N 0.871
Thhalv10002089m.g Eutrema salsugineum Thhalv10002089m.g N 0.847