27524.m000298 (Ricinus communis)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 27524.m000298 T006674_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF118
M01047_2.00 		Arabidopsis thaliana
NCGCCGYNN
NNRCGGCGN		 PBM
Sullivan et al.(2014)
pTH7330 		0.710 0.796
ERF118
M06591_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
CRF10_col100_a 		0.710 0.796
ERF118
M06592_2.00 		Arabidopsis thaliana
NGDATCHNDGATTCNNH
DNNGAATCHNDGATHCN		 Dap-seq
OMalley et al.(2016)
CRF10_colamp_a 		0.710 0.796
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
27524.m000298 AP2 130 181

Links

Other AP2 family TFs
Other Ricinus communis TFs

19 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava43300.valid.m1 Manihot esculenta cassava43300.valid.m1 I 0.813
cassava35757.valid.m1 Manihot esculenta cassava35757.valid.m1 I 0.805
cassava35758.valid.m1 Manihot esculenta cassava35758.valid.m1 I 0.805
POPTR_0008s11900 Populus trichocarpa POPTR_0008s11900 I 0.794
SapurV1A.0079s0190 Salix purpurea SapurV1A.0079s0190 I 0.794
SapurV1A.0078s0470 Salix purpurea SapurV1A.0078s0470 I 0.770
POPTR_0010s13540 Populus trichocarpa POPTR_0010s13540 I 0.770
Gorai.008G183300 Gossypium raimondii Gorai.008G183300 I 0.714
TCM_011811 Theobroma cacao TCM_011811 I 0.714
ERF118 Arabidopsis thaliana AT1G68550 D 0.710
Thhalv10019722m.g Eutrema salsugineum Thhalv10019722m.g I 0.701
Lus10021678.g Linum usitatissimum Lus10021678.g I 0.695
VIT_01s0011g03470 Vitis vinifera VIT_01s0011g03470 I 0.694
chr6.LjT13N05.60.nc Lotus japonicus chr6.LjT13N05.60.nc I 0.684
LjSGA_132504.1 Lotus japonicus LjSGA_132504.1 I 0.684
LjSGA_016572.1 Lotus japonicus LjSGA_016572.1 I 0.684
Lus10035018.g Linum usitatissimum Lus10035018.g N 0.682
GLYMA20G24920 Glycine max GLYMA20G24920 I 0.680
GLYMA10G42130 Glycine max GLYMA10G42130 I 0.679