Cagra.0706s0004 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.0706s0004 T007709_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF011
M06628_2.00
Arabidopsis thaliana
YHNHHDYCACCGHCN

NGDCGGTGRHDDNDR
Dap-seq
OMalley et al.(2016)
CEJ1_col_a
0.823 1.000
ERF011
M06629_2.00
Arabidopsis thaliana
NDNCACCGACMHH

DDKGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a
0.823 1.000
ERF010
M06690_2.00
Arabidopsis thaliana
HHNHHDYCACCGHCD

HGDCGGTGRHDDNDD
Dap-seq
OMalley et al.(2016)
DEAR2_col_a
0.823 0.980
ERF010
M06691_2.00
Arabidopsis thaliana
NNNHDBCACCGACAH

DTGTCGGTGVHDNNN
Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a
0.823 0.980
RAP2-10
M00850_2.00
Arabidopsis thaliana
NNRCCGHCNN

NNGDCGGYNN
PBM
Franco-Zorrilla et al.(2014)
DEAR4
0.823 0.959
ERF008
M00844_2.00
Arabidopsis thaliana
SHRCCGHC

GDCGGYDS
PBM
Franco-Zorrilla et al.(2014)
DEAR3
0.813 0.939
ERF008
M01048_2.00
Arabidopsis thaliana
CRCCGMCN

NGKCGGYG
PBM
Sullivan et al.(2014)
pTH7672
0.813 0.939
ERF008
M06602_2.00
Arabidopsis thaliana
NNNNNBCACCGACAHHN

NDDTGTCGGTGVNNNNN
Dap-seq
OMalley et al.(2016)
DEAR3_col_a
0.813 0.939
ERF008
M06603_2.00
Arabidopsis thaliana
NNBCACCGACAWH

DWTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a
0.813 0.939
RAP2-9
M06633_2.00
Arabidopsis thaliana
NNNNNNNDBCACCGACMHH

DDKGTCGGTGVHNNNNNNN
Dap-seq
OMalley et al.(2016)
DEAR5_col_a
0.768 0.898
RAP2-9
M06634_2.00
Arabidopsis thaliana
NCACCGACMHH

DDKGTCGGTGN
Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a
0.768 0.898
RAP2-1
M06582_2.00
Arabidopsis thaliana
NHDYCRCCGMCAH

DTGKCGGYGRHDN
Dap-seq
OMalley et al.(2016)
RAP21_col_a
0.736 0.878
RAP2-1
M06583_2.00
Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN

NNNNNHDDTGTCGGTGVHDN
Dap-seq
OMalley et al.(2016)
RAP21_colamp_a
0.736 0.878
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0706s0004.1.p AP2 21 71

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bostr.0568s0141 Boechera stricta Bostr.0568s0141 I 0.823
Bostr.27895s0153 Boechera stricta Bostr.27895s0153 I 0.823
Bostr.7867s1581 Boechera stricta Bostr.7867s1581 I 0.823
RAP2.10 Arabidopsis lyrata scaffold_700370.1 I 0.823
CEJ1 Arabidopsis lyrata fgenesh2_kg.5__1372__AT3G50260.1 I 0.823
Bra032173 Brassica rapa Bra032173 I 0.823
Bra036061 Brassica rapa Bra036061 I 0.823
DEAR3 Arabidopsis lyrata fgenesh2_kg.4__264__AT2G23340.1 I 0.823
Cagra.0342s0005 Capsella grandiflora Cagra.0342s0005 I 0.823
Cagra.29993s0001 Capsella grandiflora Cagra.29993s0001 I 0.823
Carubv10027999m.g Capsella rubella Carubv10027999m.g I 0.823
Thhalv10004985m.g Eutrema salsugineum Thhalv10004985m.g I 0.823
Thhalv10026288m.g Eutrema salsugineum Thhalv10026288m.g I 0.823
Carubv10024198m.g Capsella rubella Carubv10024198m.g I 0.823
Carubv10018162m.g Capsella rubella Carubv10018162m.g I 0.823
Cagra.4909s0050 Capsella grandiflora Cagra.4909s0050 I 0.823
Carubv10005767m.g Capsella rubella Carubv10005767m.g I 0.823
Bra017811 Brassica rapa Bra017811 I 0.823
DEAR2 Arabidopsis lyrata scaffold_803390.1 I 0.823
Bo8g079660 Brassica oleracea Bo8g079660 I 0.823
ERF010 Arabidopsis thaliana AT5G67190 D 0.823
RAP2-10 Arabidopsis thaliana AT4G36900 D 0.823
Bo4g151460 Brassica oleracea Bo4g151460 I 0.823
Bo7g063980 Brassica oleracea Bo7g063980 I 0.823
Bo7g118430 Brassica oleracea Bo7g118430 I 0.823
ERF011 Arabidopsis thaliana AT3G50260 D 0.823
Bra037124 Brassica rapa Bra037124 I 0.817
Bo9g020380 Brassica oleracea Bo9g020380 I 0.817
ERF008 Arabidopsis thaliana AT2G23340 D 0.813
Bo1g004940 Brassica oleracea Bo1g004940 I 0.813
Gorai.003G026100 Gossypium raimondii Gorai.003G026100 I 0.809
28718.m000038 Ricinus communis 28718.m000038 I 0.809
TCM_000669 Theobroma cacao TCM_000669 I 0.809
Gorai.008G077900 Gossypium raimondii Gorai.008G077900 I 0.809
orange1.1g031669m.g Citrus sinensis orange1.1g031669m.g I 0.809
gene23873-v1.0-hybrid Fragaria vesca gene23873-v1.0-hybrid I 0.809
Ciclev10026687m.g Citrus clementina Ciclev10026687m.g I 0.809
MDP0000125673 Malus domestica MDP0000125673 I 0.809
Eucgr.H02094 Eucalyptus grandis Eucgr.H02094 I 0.809
MDP0000179962 Malus domestica MDP0000179962 I 0.809
PRUPE_ppa012516mg Prunus persica PRUPE_ppa012516mg I 0.807
Bra012140 Brassica rapa Bra012140 I 0.802
Aquca_007_00717 Aquilegia coerulea Aquca_007_00717 I 0.801
Lus10010043.g Linum usitatissimum Lus10010043.g I 0.801
SapurV1A.0167s0190 Salix purpurea SapurV1A.0167s0190 I 0.801
POPTR_0014s02530 Populus trichocarpa POPTR_0014s02530 I 0.799
POPTR_0002s12550 Populus trichocarpa POPTR_0002s12550 I 0.799
SapurV1A.0423s0180 Salix purpurea SapurV1A.0423s0180 I 0.799
Aquca_010_00625 Aquilegia coerulea Aquca_010_00625 I 0.799
mgf021115m Mimulus guttatus mgf021115m I 0.799
PGSC0003DMG400004005 Solanum tuberosum PGSC0003DMG400004005 I 0.799
Lus10018727.g Linum usitatissimum Lus10018727.g I 0.799
cassava9153.m1 Manihot esculenta cassava9153.m1 I 0.799
30170.m013843 Ricinus communis 30170.m013843 I 0.799
cassava47353.m1 Manihot esculenta cassava47353.m1 I 0.799
SapurV1A.2355s0030 Salix purpurea SapurV1A.2355s0030 I 0.799
Ciclev10002733m.g Citrus clementina Ciclev10002733m.g I 0.797
orange1.1g041516m.g Citrus sinensis orange1.1g041516m.g I 0.797
mgf006561m Mimulus guttatus mgf006561m I 0.793
GLYMA17G35860 Glycine max GLYMA17G35860 I 0.791
Bra014056 Brassica rapa Bra014056 I 0.791
Cla020961 Citrullus lanatus Cla020961 I 0.791
Cucsa.352470 Cucumis sativus Cucsa.352470 I 0.791
GLYMA14G09320 Glycine max GLYMA14G09320 I 0.791
Gorai.009G214300 Gossypium raimondii Gorai.009G214300 I 0.791
Eucgr.F02317 Eucalyptus grandis Eucgr.F02317 I 0.791
Eucgr.F02319 Eucalyptus grandis Eucgr.F02319 I 0.791
GSMUA_Achr3G13190_001 Musa acuminata GSMUA_Achr3G13190_001 I 0.789
Cucsa.395960 Cucumis sativus Cucsa.395960 I 0.789
TCM_033791 Theobroma cacao TCM_033791 I 0.789
Eucgr.F00192 Eucalyptus grandis Eucgr.F00192 I 0.789
Cla022937 Citrullus lanatus Cla022937 I 0.789
Bra011744 Brassica rapa Bra011744 I 0.788
PGSC0003DMG400007951 Solanum tuberosum PGSC0003DMG400007951 I 0.786
mgf000289m Mimulus guttatus mgf000289m I 0.786
Solyc04g078640.1 Solanum lycopersicum Solyc04g078640.1 I 0.786
gene09137-v1.0-hybrid Fragaria vesca gene09137-v1.0-hybrid I 0.785
Bostr.6864s0220 Boechera stricta Bostr.6864s0220 I 0.785
GSMUA_AchrUn_randomG12040_001 Musa acuminata GSMUA_AchrUn_randomG12040_001 I 0.785
cassava17493.valid.m1 Manihot esculenta cassava17493.valid.m1 I 0.784
POPTR_0007s10750 Populus trichocarpa POPTR_0007s10750 I 0.784
POPTR_0005s18430 Populus trichocarpa POPTR_0005s18430 I 0.784
SapurV1A.0689s0100 Salix purpurea SapurV1A.0689s0100 I 0.784
Carubv10010891m.g Capsella rubella Carubv10010891m.g I 0.781
PK15612.1 Cannabis sativa PK15612.1 I 0.781
GLYMA11G05700 Glycine max GLYMA11G05700 I 0.781
Cagra.1735s0005 Capsella grandiflora Cagra.1735s0005 I 0.781
GLYMA05G19050 Glycine max GLYMA05G19050 I 0.781
GLYMA01G39540 Glycine max GLYMA01G39540 I 0.781
Thhalv10000354m.g Eutrema salsugineum Thhalv10000354m.g I 0.781
LjSGA_004289.2 Lotus japonicus LjSGA_004289.2 I 0.781
Bostr.12302s0138 Boechera stricta Bostr.12302s0138 I 0.781
MTR_1g019110 Medicago truncatula MTR_1g019110 I 0.780
GLYMA04G04355 Glycine max GLYMA04G04355 I 0.779
Ca_02170 Cicer arietinum Ca_02170 I 0.779
MTR_5g016750 Medicago truncatula MTR_5g016750 I 0.779
GLYMA06G04490 Glycine max GLYMA06G04490 I 0.779
Gorai.003G099700 Gossypium raimondii Gorai.003G099700 I 0.778
Gorai.010G021900 Gossypium raimondii Gorai.010G021900 I 0.778
GSMUA_AchrUn_randomG26940_001 Musa acuminata GSMUA_AchrUn_randomG26940_001 I 0.777
VIT_18s0001g10150 Vitis vinifera VIT_18s0001g10150 I 0.775
mgf025363m Mimulus guttatus mgf025363m I 0.774
GSMUA_Achr4G20280_001 Musa acuminata GSMUA_Achr4G20280_001 I 0.772
SapurV1A.1340s0030 Salix purpurea SapurV1A.1340s0030 I 0.769
LjSGA_134387.1 Lotus japonicus LjSGA_134387.1 I 0.769
SapurV1A.1616s0040 Salix purpurea SapurV1A.1616s0040 I 0.769
RAP2-9 Arabidopsis thaliana AT4G06746 D 0.768
VIT_07s0031g00190 Vitis vinifera VIT_07s0031g00190 I 0.768
GLYMA17G18580 Glycine max GLYMA17G18580 I 0.768
RAP2.9 Arabidopsis lyrata fgenesh2_kg.6__2823__AT4G06746.1 I 0.768
PRUPE_ppa012302mg Prunus persica PRUPE_ppa012302mg I 0.766
MDP0000756341 Malus domestica MDP0000756341 I 0.766
GSMUA_Achr5G22190_001 Musa acuminata GSMUA_Achr5G22190_001 I 0.764
PGSC0003DMG400034101 Solanum tuberosum PGSC0003DMG400034101 I 0.764
Cucsa.102560 Cucumis sativus Cucsa.102560 I 0.763
Cla014175 Citrullus lanatus Cla014175 I 0.763
ONIVA06G05630 Oryza nivara ONIVA06G05630 I 0.762
ORGLA06G0041000 Oryza glaberrima ORGLA06G0041000 I 0.762
Pavir.J20437 Panicum virgatum Pavir.J20437 I 0.762
OPUNC06G04240 Oryza punctata OPUNC06G04240 I 0.762
LPERR06G04000 Leersia perrieri LPERR06G04000 I 0.762
Pavir.J34361 Panicum virgatum Pavir.J34361 I 0.762
BRADI1G48320 Brachypodium distachyon BRADI1G48320 I 0.762
OGLUM06G04560 Oryza glumaepatula OGLUM06G04560 I 0.762
OBART06G04460 Oryza barthii OBART06G04460 I 0.762
OS06G0166400 Oryza sativa OS06G0166400 I 0.762
BGIOSGA022380 Oryza indica BGIOSGA022380 I 0.762
ORUFI06G04420 Oryza rufipogon ORUFI06G04420 I 0.762
Sb10g004580 Sorghum bicolor Sb10g004580 I 0.762
Thhalv10029052m.g Eutrema salsugineum Thhalv10029052m.g I 0.760
Lus10009373.g Linum usitatissimum Lus10009373.g I 0.757
GRMZM2G301860 Zea mays GRMZM2G301860 I 0.753
Pavir.J27349 Panicum virgatum Pavir.J27349 I 0.746
Pavir.J04844 Panicum virgatum Pavir.J04844 I 0.746
Cla020550 Citrullus lanatus Cla020550 I 0.746
MLOC_81350 Hordeum vulgare MLOC_81350 I 0.746
BGIOSGA014220 Oryza indica BGIOSGA014220 I 0.746
OMERI04G22870 Oryza meridionalis OMERI04G22870 I 0.746
ONIVA04G25910 Oryza nivara ONIVA04G25910 I 0.746
LPERR04G23120 Leersia perrieri LPERR04G23120 I 0.746
GSMUA_Achr8G15640_001 Musa acuminata GSMUA_Achr8G15640_001 I 0.746
BRADI5G24110 Brachypodium distachyon BRADI5G24110 I 0.746
GRMZM2G174917 Zea mays GRMZM2G174917 I 0.746
GRMZM2G421033 Zea mays GRMZM2G421033 I 0.746
ORGLA04G0237600 Oryza glaberrima ORGLA04G0237600 I 0.746
OGLUM04G27370 Oryza glumaepatula OGLUM04G27370 I 0.746
Traes_2BL_1E57B73B21 Triticum aestivum Traes_2BL_1E57B73B21 I 0.746
Cucsa.367300 Cucumis sativus Cucsa.367300 I 0.746
BGIOSGA014221 Oryza indica BGIOSGA014221 I 0.746
Sb06g030660 Sorghum bicolor Sb06g030660 I 0.746
OS04G0648900 Oryza sativa OS04G0648900 I 0.746
LjSGA_007705.1 Lotus japonicus LjSGA_007705.1 I 0.741
Ca_01556 Cicer arietinum Ca_01556 I 0.739
MTR_3g102100 Medicago truncatula MTR_3g102100 I 0.739
RAP2.1 Arabidopsis lyrata scaffold_104275.1 I 0.738
RAP2-1 Arabidopsis thaliana AT1G46768 D 0.736
GSMUA_Achr9G11310_001 Musa acuminata GSMUA_Achr9G11310_001 I 0.732
GSMUA_Achr7G05410_001 Musa acuminata GSMUA_Achr7G05410_001 I 0.732
Bostr.3877s0058 Boechera stricta Bostr.3877s0058 I 0.731
GSMUA_Achr7G20800_001 Musa acuminata GSMUA_Achr7G20800_001 I 0.729
GRMZM2G119865 Zea mays GRMZM2G119865 I 0.729
AMTR_s00051p00204250 Amborella trichopoda AMTR_s00051p00204250 I 0.695